Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1066 ATGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGCTCAAGCCGCAGTAGGAAATGCTATTCGGACAGTAGTGGATCAAGTTACGTGGGGAAATCTCCGATCACTGCCACTGCCGTGAATTATCCGGTGCTGTCTTCCAGTTCCGACAATCTCTCACGATCATCATCTTCTTCAATGGCTGCTCCATCGGTCGGCGAAACGGACGGCAAAGATTTTCCTTCCGACCTCCCTTATCTGTCCGGTTTCAACAACCATTTCTCATCGGAGGCGATTCCCGGCGCTCTTCCTCAATCCCAAAACAGTCCTCTCATATGCCCCTTCGGCCTCTATGCCGAGCAGATCTCCGGCACTTCCTTCACATCGCCTCGGAAAGCTAACTTGTGCAGTTGGCTGTATCGGATTAAGCCGTCGGTCACGCATGAACCGTTTAGGCAACGTTTGCCTAAAAACGAGAAGTTGATCAGTGAATTTAATGCATCAAATTGTTCGTCGACTCCGACTCAGCTAAGGTGGAGACCGGCGGATGTTCCTGATTCACCGGTGGATTTCGTTGATGGACTGTACACTGTCTGCGGAGCCGGAAGTTCGTTTCTCCGCCATGGGTTTGCTATTCACATGTACACAGCCAATAAGTCGATGGAGAACTGTGCGTTCTGTAATGCCGATGGCGACTTCTTGATAGTTCCTCAGAGTGGAAGGCTGTGGATTATAACAGAGTGTGGTAGACTGGAAGTTTCTCCAGGTGAAATAGTGGTTTTACCTCAAGGTTTTCGCTTTGTTGTTTATCTGCCTGATGGTCCATCACGTGGCTATGTAGCTGAGATTTTTGGCAGTCATTTCCAGCTTCCTGACCTTGGACCGATAGGTGCTAATGGTCTTGCTGCACCAAGGGATTTCCTTGCGCCTGTAGCCTGGTTTGAAAAGAGTTCTCGTCCTGGTTACACAATTGTTCAAAAATTTGGTGGGGAATTGTTTACTGCGATACAAGACTTTTCTCCCTTTAATGTAGTTGCCTGGCATGGAAATTATGTTCCCTATAAGTACGATCTCAGTAAGTTCTGCCCTTACAATACTGTGTTGTTTGATCACAGTGATCCATCAATAAATACAGTATTAACGGCGCCAACTGATAAACCTGGAGTAGCATTACTCGACTTTGTCATTTTCCCTCCCAGATGGCTTGTTGCTGAACACACATTCCGTCCTCCATATTACCATCGTAACTGCATGAGTGAATTTATGGGCCTCATATATGGAGGCTACGAGGCAAAAGCTGGTGGGTTCGTTCCCGGAGGTGCCAGCCTTCATAATTGCATGACTCCCCATGGTCCTGATACTAAAACATATGAGGCTACTATTGCTCAAGGGAACGACGTTGGACCACACAAAATCACTGGCACAATGGCGTTTATGTTTGAATCAAGTCTGATCCCTCGTGTATGTTCTTGGGCTCTCGAGTCCCCATTCATGGATCACGACTATTACCAATGCTGGATAGGATTGAAATCTCATTTCAAAAATGAAGGAAGAGGAGATACGGATCCACAGAAGGTAAGAACTGAGTCTGAAAATGGAAGACAAATTGGATAA 1596 46.68 MWIQRYKKRDTICRSSRSRKCYSDSSGSSYVGKSPITATAVNYPVLSSSSDNLSRSSSSSMAAPSVGETDGKDFPSDLPYLSGFNNHFSSEAIPGALPQSQNSPLICPFGLYAEQISGTSFTSPRKANLCSWLYRIKPSVTHEPFRQRLPKNEKLISEFNASNCSSTPTQLRWRPADVPDSPVDFVDGLYTVCGAGSSFLRHGFAIHMYTANKSMENCAFCNADGDFLIVPQSGRLWIITECGRLEVSPGEIVVLPQGFRFVVYLPDGPSRGYVAEIFGSHFQLPDLGPIGANGLAAPRDFLAPVAWFEKSSRPGYTIVQKFGGELFTAIQDFSPFNVVAWHGNYVPYKYDLSKFCPYNTVLFDHSDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGGYEAKAGGFVPGGASLHNCMTPHGPDTKTYEATIAQGNDVGPHKITGTMAFMFESSLIPRVCSWALESPFMDHDYYQCWIGLKSHFKNEGRGDTDPQKVRTESENGRQIG 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24198067 24202283 + CcPI632755_07g010660.1 Cco07g1066 183719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1066 531 FunFam Homogentisate 1,2-dioxygenase 341 478 - -
Cco07g1066 531 SUPERFAMILY RmlC-like cupins 77 511 IPR011051 -
Cco07g1066 531 MobiDBLite consensus disorder prediction 49 65 - -
Cco07g1066 531 NCBIfam homogentisate 1,2-dioxygenase 78 507 IPR005708 GO:0004411(InterPro)|GO:0006559(InterPro)|GO:0006570(InterPro)
Cco07g1066 531 MobiDBLite consensus disorder prediction 49 70 - -
Cco07g1066 531 Pfam Homogentisate 1,2-dioxygenase C-terminal 353 507 IPR046451 -
Cco07g1066 531 Gene3D Jelly Rolls 340 478 IPR014710 -
Cco07g1066 531 MobiDBLite consensus disorder prediction 510 531 - -
Cco07g1066 531 CDD cupin_HGO_N 171 279 - -
Cco07g1066 531 Pfam Homogentisate 1,2-dioxygenase N-terminal 80 352 IPR046452 -
Cco07g1066 531 PANTHER HOMOGENTISATE 1,2-DIOXYGENASE 77 510 IPR005708 GO:0004411(PANTHER)|GO:0004411(InterPro)|GO:0005737(PANTHER)|GO:0006559(InterPro)|GO:0006559(PANTHER)|GO:0006570(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1066 K00451 - - csv:101206356 964.911
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g149 . . . . . . . . . Cmo04g00599 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1041 Cone15ag1030 . . . . . . . . . . . . . . . Cma04g00562 . Car04g00533 . . Cpe01g00507 . . . . . . . Cla07g00942 Cam07g1018 Cec07g1088 Cco07g1066 Clacu07g0987 Cmu07g0983 Cre07g1357 . . Chy07g00956 Cme07g01326
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009963 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32