Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1071 ATGGCTTCAGTGCTGCAAGGTGGTGGTGATGCGGGAGGGAATCCCAGAAGGACGGATAATGAAAAGTTTAGTGCCGGAAAGCAACAGAAAGAGAGTAAAATTGTTAAACACGTAGCTCGAAATTCCGTTCAGACTCCTACTGTCGCGGCCACTAATGGCGGTGGTAATCCGTCTTCTCCTTCTCATAATCCGATCGATGCTTTAATCACGTCCAGGGATTCTTCGGGTCAAAATCGCTGCATTGAACCGGTTAATGCTGAGGACGTGCCAGGATACACGAGGTTTCAGAACTGGGTTAGGATTAGTTTGAATTCCAGATCGAGGTCTGGGATTAAAGAGCTTACGACGAAGCTGAAGGGTGAGCTTGATCAGGTTAGGAGCCTCGTGAAGAAGTTTGAAACTCAGGAGCTCCAGTTTAGTGGTTATGGTGGTGATGTTGGACATAGTCAGTCACAGTTTTCAGCTAATAATTTGGCAGAGAGGGCTGGTACTGTTAGTATAATGAAGGTTAATTCCGAGGTGGGTTCTGCAGATGTGCCTGCTTCGAGGCTTGTTCGATGTGTTTCGGTGGCAGAAAACTTTGGAGAGTTTGCAGAGAAAGAGATGAGCAAGCATAAAAATTCAAAATATATTTCTACAAAGGAGTTCCCGGCGGATTGTAATTTGAATGGAGGTAAGATTGGTCCAGTGCTTAAAAGCTGTAGTAATTTGCTGGAAAGATTGATGAAACATAAATTTGGTTGGGTATTTAATGTGCCTGTTGATGCAAAGCGTTTGGGGCTTCACGATTATCATAAGATCATAAGGAAGCCAATGGATTTGGGTACCATAAAGATGAGACTAAATAAAAATTGGTACAAGTCACCAAGAGAGTTTGCTGAGGATGTGAGACTAACGTTTAGCAATGCCATTACATATAACCCAAAAGGGGAGGATGTTCATACAATGGCAGAGCAGTTGTCTAAGATATTCGAAGAGAAATGGAAGATAATTGAAGGCAAACAAAATGTTGGTAAGGGATTTCAGATGGATGATGGTTCAGTTTTACCTACACCCACCTCTAGAAAATCTCCAGCTCTTGCCACTCCTCCAGTGGAATCGAGAACTTTCAGTAGATCGGATTCTACAACAAAGCCTCCACCTTCAAATAGAGGGATTTTAGGTAAGTTGGATTCAATAACAAAACCCCCCAATCCCAAACAGAACCCCACAGATGTTGCCCCTCCTGATAAGAAACCAAAAGCAAAAAATCACGAAATCAGAGATATGACTTATGAAGAAAAACAGAAACTGAGCATTGACCTTCAGGATTTACCATCAGATAAGCTGAATAATGTTGTCAAGATTATCAAGAAAAGAAACCAGGGACTCTTCCAAAACGACGATGAAATTGAGTTGGATATTGGCCGTGTTGATTCCGAAACCTTATGGGAACTTGAGAGGTTTGTGGCAAATCACAAAAGAAGTTTGATCAAGAATAAGAGAAAAGCCGACGCGAATCTTCAATCAGGAGAAAAATGGTCTCACTACTCGACCAATGATACTGATCTAGCAATGGCTAATGCAGGAGGAAAACCTGTAGGTGGCAATGCAGACTCTGAAAATGATAGTTCCTCGACATGTGGGGATGGAAATCAGTCTCCCTCAGTTAGGATTCGCAATGCTCACGTAACGATTCTTATTGTTCTATCATCTTCCAGCATCTACAGTGCATAA 1716 42.25 MASVLQGGGDAGGNPRRTDNEKFSAGKQQKESKIVKHVARNSVQTPTVAATNGGGNPSSPSHNPIDALITSRDSSGQNRCIEPVNAEDVPGYTRFQNWVRISLNSRSRSGIKELTTKLKGELDQVRSLVKKFETQELQFSGYGGDVGHSQSQFSANNLAERAGTVSIMKVNSEVGSADVPASRLVRCVSVAENFGEFAEKEMSKHKNSKYISTKEFPADCNLNGGKIGPVLKSCSNLLERLMKHKFGWVFNVPVDAKRLGLHDYHKIIRKPMDLGTIKMRLNKNWYKSPREFAEDVRLTFSNAITYNPKGEDVHTMAEQLSKIFEEKWKIIEGKQNVGKGFQMDDGSVLPTPTSRKSPALATPPVESRTFSRSDSTTKPPPSNRGILGKLDSITKPPNPKQNPTDVAPPDKKPKAKNHEIRDMTYEEKQKLSIDLQDLPSDKLNNVVKIIKKRNQGLFQNDDEIELDIGRVDSETLWELERFVANHKRSLIKNKRKADANLQSGEKWSHYSTNDTDLAMANAGGKPVGGNADSENDSSSTCGDGNQSPSVRIRNAHVTILIVLSSSSIYSA 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24243399 24245844 + CcPI632755_07g010710.1 Cco07g1071 183724

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1071 571 MobiDBLite consensus disorder prediction 531 548 - -
Cco07g1071 571 ProSiteProfiles NET domain profile. 413 494 IPR027353 -
Cco07g1071 571 Pfam Bromodomain 234 318 IPR001487 GO:0005515(InterPro)
Cco07g1071 571 MobiDBLite consensus disorder prediction 347 382 - -
Cco07g1071 571 MobiDBLite consensus disorder prediction 38 78 - -
Cco07g1071 571 MobiDBLite consensus disorder prediction 339 418 - -
Cco07g1071 571 SMART bromo_6 223 333 IPR001487 GO:0005515(InterPro)
Cco07g1071 571 Gene3D - 416 496 IPR038336 -
Cco07g1071 571 Gene3D - 204 343 IPR036427 GO:0005515(InterPro)
Cco07g1071 571 MobiDBLite consensus disorder prediction 1 78 - -
Cco07g1071 571 MobiDBLite consensus disorder prediction 15 37 - -
Cco07g1071 571 Pfam Bromodomain extra-terminal - transcription regulation 423 484 IPR027353 -
Cco07g1071 571 PRINTS Bromodomain signature 261 277 IPR001487 GO:0005515(InterPro)
Cco07g1071 571 PRINTS Bromodomain signature 277 295 IPR001487 GO:0005515(InterPro)
Cco07g1071 571 PRINTS Bromodomain signature 295 314 IPR001487 GO:0005515(InterPro)
Cco07g1071 571 PRINTS Bromodomain signature 245 258 IPR001487 GO:0005515(InterPro)
Cco07g1071 571 ProSiteProfiles Bromodomain profile. 242 314 IPR001487 GO:0005515(InterPro)
Cco07g1071 571 SUPERFAMILY Bromodomain 226 333 IPR036427 GO:0005515(InterPro)
Cco07g1071 571 PANTHER OSJNBA0053K19.4 PROTEIN 64 514 - -
Cco07g1071 571 CDD Bromo_plant1 230 328 IPR037377 -
Cco07g1071 571 MobiDBLite consensus disorder prediction 517 548 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1071 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1922 Cco-Chr2:32109328 Cco07g1071 Cco-Chr7:24243399 1.70E-56 dispersed
Cco07g1071 Cco-Chr7:24243399 Cco09g1142 Cco-Chr9:10958371 1.90E-84 dispersed
Cco06g1972 Cco-Chr6:29866858 Cco07g1071 Cco-Chr7:24243399 2.60E-39 transposed
Cco04g2197 Cco-Chr4:35615492 Cco07g1071 Cco-Chr7:24243399 5.50E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g137 . . . . . . Bma10g00481 . Cmo16g00449 Cmo04g00605 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1035 Cone15ag1021 . . . . . . Bda05g00783 . . Bpe03g00850 . . . . . Cma04g00565 Cma16g00417 Car04g00536 Car16g00382 Cpe14g00351 Cpe01g00510 . . . . . . . Cla07g00947 Cam07g1022 Cec07g1092 Cco07g1071 Clacu07g0991 Cmu07g0987 Cre07g1362 . . Chy07g00961 Cme07g01330
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003323 2 4 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 9 1 48