Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1080 ATGGAGTTTCCAATTTCTCTATTCAGGATTCTCGCCTTTCTTCTTCTGTGGATTTTGCTGTGCCATGGATTTGGATCCGACGCTCAGCTTTTGCCTGAATCCGAAGTGAAAACCCTTCAAACAATATCTTCAAAACTAAAGAATCTAAGCTGGAATGTAACCCGGAGTTCTTGCATTCGAGGGGAAGGCTTTTCCAATCAAGCTTTCCTGGGGAACCAAATATTGAGGAATGTCTCATGCAATTGTACCTCCACTCTTTGTCATGTGACAATTATCCTGCTTAAGGGTCTCAATGTAACAGGAACTTTTCCAGCTGAATTTGGTAATCTTACTCATCTGCAGGAACTTGATCTTACTCGCAATCATATTATTGGCCAGCTACCCAGTAGTCTTGCCAATGCTCCTCTAGTCAAACTTTCTCTCTTGGGAAACAGGCTAAACGGTTCAATTCCCAAGGAAATTGGTGACATTGGCACCCTCGAAGAGCTGGTCTTGGAAGACAACCAGCTAACTGGAAGTCTACCTGCCAGCCTTGGAAATCTGCACGGTTTGAGAAGACTGCTTCTGTCTGCAAACAATTTCACAGGAAAAATACCAGACTCATTTGGAAACTTAAAGAACTTGGTTGATTTTAGGATAGACGGGAATGGGCTGTCTGGGAAGATTCCTGAATTCATTGGGAATTTGATCAACCTCGACAGACTGGATATACAAGGAACATCGATGGAAAATCCCATTCCTTCTACAATATCTCAATTGAAGAACCTGACTCAATTGAGGATATCTGACTTGAAGGGATCATTTATAAGTTTCCCCAATTTGACTGATATGATAAACATGGAGGAATTGGTCCTGAGGAACTGTTTAATTAATGGCTCAATCCCCGAGTATATTGGAGAAATGAACAAATTATCAACTTTAGATCTAAGCTTCAACCATTTAACTGGTCCAATTCCTGAGACATTTCAGAATCTGATGAAGAAAAAGATAGACTTCATGTTTCTGACAAACAACTCACTGAGTGGTGAAGTGCCTGGTTGGATCTTGAGTAGCAAAAAGAACATAGATTTGTCTTACAACAACTTTTCAGGGTCTACTCTTGCTAGTTGCCAACAATCACCTGTGAACTTGATTGCGAGTTACCCACCTGCAGTGAATCATCAAGTTCCTTGGTGCCTCAAGAAAGACCTTCCATGCTCTGGAAAAGCTGAATATCATTCCTTGTTTATTAATTGTGGAGGAACTAGATTGATGGCTGATGGGCATGATTATGAAGAGGACTTAACTACAGAAGGCAAGTCAAACTTCTTTTCTGTTTCAGAAAAATGGGCTTACAGCAGTACAGGAGTTTTTTTGGGTGATGAAAATGCTGACTATATAGCTTCAAATAAGCTTGGCCTGAATGTGAGTGGTCCACGGTATTATCAAAATGCTCGACTTTCCCCTCTCTCCCTCAAATATTATGGCCTTTGCCTGCGGAGCGGAAGCTACAATGTGAAGCTCCACTTTGCTGAAATTATGTACACTAATGATCAAACTTTTAGCAGCCTGGGAAAGCGTATATTCGATATATCAATTCAAGGAAAACTAGTGAAGAAGGATTTCAATATTATGGAGGCAGCTGGGGGTGTTGGTAAGAACTTCACAGTGGAAGATAAAAATGTTCTTGTCAGTGGCAGTACCCTTGAGATTCATCTATATTGGGCTGGTAAAGGAACCACAGCTGTGCCAGACAGAGGAGTTTATGGACCCCTTATTTCTGCTATCACAGTTACGCCAAACTTCAAAATCAATGAGGGAGGTCTATCAGCTGGGGTACTTGCCGGCATCATAATTTCTTCATGTGCAGTAGTCATCATACTGGTCGTAGTATTTCTTTGGATGACAGGTTACATATGTAAGAAGGAAGTCCTAGATAATGAACTTTCTGGTGTAGATTTACAAACGGGTCATTTTACCTTGAAACAAATTAAAGCTGCCACCAACAACTTTGATCCTAAAAGTAAAATAGGCGAAGGTGGATTTGGGCCTGTCTACAAGGGTGTACTGTCAGATGGTGCTTTGATTGCCGTGAAGCAACTCTCCTCGAAATCGAAGCAAGGGAGCCGTGAGTTTGTTACTGAGATTGGCATGATATCTGCATTGCAACACCCAAACCTTGTTAAGCTCTATGGCTGCTGCGTTGAGGGAAACCAATTGTTGCTTGTATATGAATATATGGAAAATAATAGTCTTGCCCGTGCACTTTTCGGTCGAGAGGAACAAAGGCTACATCTTGACTGGCGAACAAGGAAGAAGATATGCTTGGAAATAGCTAGGGGATTAGCTTACCTTCATGAAGAATCAAGGTTAAAAATCGTTCACAGAGACATAAAGGCCACAAACGTACTGCTCGATAAAGATCTTAATGCTAAGATTTCTGACTTTGGTTTGGCTAAGCTTGACGAAGAGGAGAACACCCACATCAGCACACGAATTGCTGGAACCATCGGTTATATGGCACCCGAGTATGCAATGAGAGGATACTTGACTGATAAGGCAGATGTTTACAGCTTTGGAATTGTTGCCTTAGAGATAGTTAGTGGAAAAAGTAACACAAATTACAGGCCAAAGGAAGAGTTTGTTTATCTTCTTGATTGGGCCTATGTACTGGAAGAGCAAGGCAACCTTCTAGAACTGGTAGATCCAGACCTTGGTTCAAATTACTCATCCGAGGAAGCAATGAGGATGCTGAACGTAGCTCTCTTATGCACCAACCCATCTCCCACTCTCAGACCCGCAATGTCTTCTGTGGTGAGTATGCTTGAGGGTAAGATTGCAGTCCAAGCACCAATCATCAAGCGCACTTCGTCCGGCCAAGATCCAAGGTTTAGAGCCTTTGAGAAGCTCTCACACGACAGCCGATCGCAGGTTTCAAGCTCAACGGTTTCGCTAGATGCTGAGCCTCAAAAAAGCATGTTAATGGATGGGCCATGTACTGATTCTTCAGTGTCCATTGATACCAATGCCAATAATCTCTACCAATCTGCATCAAGTGAGCCCCTCCAGAATCATCGTCGTGTGGATAATATGAAACCATCAGCTAAGTAA 3090 42.17 MEFPISLFRILAFLLLWILLCHGFGSDAQLLPESEVKTLQTISSKLKNLSWNVTRSSCIRGEGFSNQAFLGNQILRNVSCNCTSTLCHVTIILLKGLNVTGTFPAEFGNLTHLQELDLTRNHIIGQLPSSLANAPLVKLSLLGNRLNGSIPKEIGDIGTLEELVLEDNQLTGSLPASLGNLHGLRRLLLSANNFTGKIPDSFGNLKNLVDFRIDGNGLSGKIPEFIGNLINLDRLDIQGTSMENPIPSTISQLKNLTQLRISDLKGSFISFPNLTDMINMEELVLRNCLINGSIPEYIGEMNKLSTLDLSFNHLTGPIPETFQNLMKKKIDFMFLTNNSLSGEVPGWILSSKKNIDLSYNNFSGSTLASCQQSPVNLIASYPPAVNHQVPWCLKKDLPCSGKAEYHSLFINCGGTRLMADGHDYEEDLTTEGKSNFFSVSEKWAYSSTGVFLGDENADYIASNKLGLNVSGPRYYQNARLSPLSLKYYGLCLRSGSYNVKLHFAEIMYTNDQTFSSLGKRIFDISIQGKLVKKDFNIMEAAGGVGKNFTVEDKNVLVSGSTLEIHLYWAGKGTTAVPDRGVYGPLISAITVTPNFKINEGGLSAGVLAGIIISSCAVVIILVVVFLWMTGYICKKEVLDNELSGVDLQTGHFTLKQIKAATNNFDPKSKIGEGGFGPVYKGVLSDGALIAVKQLSSKSKQGSREFVTEIGMISALQHPNLVKLYGCCVEGNQLLLVYEYMENNSLARALFGREEQRLHLDWRTRKKICLEIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLEEQGNLLELVDPDLGSNYSSEEAMRMLNVALLCTNPSPTLRPAMSSVVSMLEGKIAVQAPIIKRTSSGQDPRFRAFEKLSHDSRSQVSSSTVSLDAEPQKSMLMDGPCTDSSVSIDTNANNLYQSASSEPLQNHRRVDNMKPSAK 1029
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24321438 24333415 - CcPI632755_07g010800.1 Cco07g1080 183733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1080 1029 Gene3D - 405 594 - -
Cco07g1080 1029 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 961 IPR051824 -
Cco07g1080 1029 MobiDBLite consensus disorder prediction 966 981 - -
Cco07g1080 1029 FunFam Putative LRR receptor-like serine/threonine-protein kinase 740 947 - -
Cco07g1080 1029 ProSiteProfiles Protein kinase domain profile. 664 946 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1080 1029 Gene3D Transferase(Phosphotransferase) domain 1 740 947 - -
Cco07g1080 1029 SUPERFAMILY Protein kinase-like (PK-like) 647 947 IPR011009 -
Cco07g1080 1029 SMART serkin_6 664 933 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1080 1029 Pfam Leucine Rich Repeat 112 133 IPR001611 GO:0005515(InterPro)
Cco07g1080 1029 Pfam Leucine Rich Repeat 303 325 IPR001611 GO:0005515(InterPro)
Cco07g1080 1029 Gene3D Ribonuclease Inhibitor 226 401 IPR032675 -
Cco07g1080 1029 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 82 174 - -
Cco07g1080 1029 Pfam Protein tyrosine and serine/threonine kinase 667 933 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1080 1029 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 175 267 - -
Cco07g1080 1029 Pfam Leucine rich repeat 159 218 IPR001611 GO:0005515(InterPro)
Cco07g1080 1029 Gene3D Ribonuclease Inhibitor 35 158 IPR032675 -
Cco07g1080 1029 Gene3D Ribonuclease Inhibitor 159 225 IPR032675 -
Cco07g1080 1029 Gene3D Phosphorylase Kinase; domain 1 632 739 - -
Cco07g1080 1029 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 405 594 - -
Cco07g1080 1029 SMART LRR_typ_2 110 134 IPR003591 -
Cco07g1080 1029 SMART LRR_typ_2 157 180 IPR003591 -
Cco07g1080 1029 SMART LRR_typ_2 181 204 IPR003591 -
Cco07g1080 1029 SMART LRR_typ_2 301 324 IPR003591 -
Cco07g1080 1029 Pfam Malectin domain 408 589 IPR021720 -
Cco07g1080 1029 CDD STKc_IRAK 670 937 - -
Cco07g1080 1029 SUPERFAMILY L domain-like 79 364 - -
Cco07g1080 1029 MobiDBLite consensus disorder prediction 963 1029 - -
Cco07g1080 1029 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1080 1029 MobiDBLite consensus disorder prediction 989 1017 - -
Cco07g1080 1029 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 633 739 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1080 Cco-Chr7:24321438 Cco11g1784 Cco-Chr11:30564885 5.20E-290 dispersed
Cco07g1080 Cco-Chr7:24321438 Cco11g1783 Cco-Chr11:30552622 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86974 PF07714 PK_Tyr_Ser-Thr 2.70E-49 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1080 - - - 0.0