Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1085 ATGAAGATTCAGTGTAACGTCTGCGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCTTGCGACGAGAAGATTCATGCAGCCAACAAGCTCGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGGCTCTTCATCTCAGATGCCTAAATGCGATATCTGCCAGGAAGCTAGTGGCTATATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGCGATGTTGCTATACACACAGCAAATACTTATGTAACTGGTCATCAGCGCTTTCTACTTACTGGTGTGAAAGTGGCGCTCGAGCCAACTGACCCCGTTGCTTGTTCTTCCATGGATAAGTCACATTCTCGAGAGAAGTCTACTGAGACTAAAGTTAGACCACTGTCCGAAAGGGAATTCTCGCTGCCTTCTCCTGATGAACTCAATAGAAGCTTGTCTGTTCTAGGTGGATCTGAGGACTTTATGGCAAATAGAACATTGCTTACCGGAGGCGGAGATTCTGTTTCTGGTGGTTTTTCTCAGTGGCAAATGGATGAACTTATTAATCTGACTGGATTCAATCAGAACTATGGGTATATGGATAACGGATCATCCAAGGCTGATAGTGGTAAGCTTGGGGATTCTGATTCATCACCAGTTTTGAGAGCTGCTGACATCGAACTGGACGATGACACTGAATGCTCGGGTCAGGTTCCAGAGGCTTACTGGACAGTGCCTCAGATTCCCTCTCCACCCACAGCGTCAGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCTGTTCTTCAGAAAAGGTTCAACATTGCTCACATAATGGTACCTTCTCGAAACGAAGAAGACAGTTCTAG 897 46.6 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACSSMDKSHSREKSTETKVRPLSEREFSLPSPDELNRSLSVLGGSEDFMANRTLLTGGGDSVSGGFSQWQMDELINLTGFNQNYGYMDNGSSKADSGKLGDSDSSPVLRAADIELDDDTECSGQVPEAYWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSEKVQHCSHNGTFSKRRRQF 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24391664 24393859 - CcPI632755_07g010850.1 Cco07g1085 183738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1085 298 MobiDBLite consensus disorder prediction 115 142 - -
Cco07g1085 298 CDD Bbox1_BBX-like 56 99 IPR049808 -
Cco07g1085 298 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 280 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cco07g1085 298 MobiDBLite consensus disorder prediction 117 135 - -
Cco07g1085 298 FunFam B-box zinc finger protein 22 1 93 - -
Cco07g1085 298 Pfam B-box zinc finger 3 47 IPR000315 GO:0008270(InterPro)
Cco07g1085 298 Pfam B-box zinc finger 53 96 IPR000315 GO:0008270(InterPro)
Cco07g1085 298 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cco07g1085 298 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Cco07g1085 298 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cco07g1085 298 Gene3D Classic Zinc Finger 1 92 - -
Cco07g1085 298 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cco07g1085 298 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1085 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1775 Cco-Chr4:32691770 Cco07g1085 Cco-Chr7:24391664 6.40E-20 dispersed
Cco07g0890 Cco-Chr7:20775766 Cco07g1085 Cco-Chr7:24391664 2.20E-21 dispersed
Cco07g1085 Cco-Chr7:24391664 Cco11g0413 Cco-Chr11:4270059 4.50E-29 dispersed
Cco07g1085 Cco-Chr7:24391664 Cco02g0508 Cco-Chr2:4723704 9.20E-30 transposed
Cco07g1085 Cco-Chr7:24391664 Cco08g1639 Cco-Chr8:27887923 9.20E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1564 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.4 1.8e-83 306.6
Cco06g1497 . 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 51.4 8.8e-59 224.6
Cco06g1497 . 1 375 C2C2-CO-like Transcription Factor Family AT5G57660 50.5 1.7e-67 253.4
Cco08g1564 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 8.3e-54 208.0
Cco02g1179 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 5.8e-90 328.2
Cco02g0319 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 2.9e-89 325.9
Cco02g1179 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 2.1e-87 319.7
Cco02g0319 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 3.9e-86 315.5
Cco02g1179 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 2.1e-87 319.7
Cco02g0319 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 3.9e-86 315.5
Cco02g0508 . 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 55.2 3.6e-51 199.1
Cco11g0413 . 1 184 C2C2-CO-like Transcription Factor Family AT1G75540 53.2 1.4e-42 170.6
Cco07g1085 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.3 4.1e-76 282.0
Cco07g0890 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 9.6e-56 213.4
Cco04g1775 . 1 107 C2C2-CO-like Transcription Factor Family AT2G21320 81.3 5.7e-48 187.6
Cco07g0890 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 6.4e-58 220.7
Cco04g1775 . 1 107 C2C2-CO-like Transcription Factor Family AT4G38960 82.2 1.2e-48 189.9
Cco02g0508 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 3.0e-55 212.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59655 PF00643 zf-B_box 3.60E-07 No_clan Cco TF