Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1085 ATGAAGATTCAGTGTAACGTCTGCGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCTTGCGACGAGAAGATTCATGCAGCCAACAAGCTCGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGGCTCTTCATCTCAGATGCCTAAATGCGATATCTGCCAGGAAGCTAGTGGCTATATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGCGATGTTGCTATACACACAGCAAATACTTATGTAACTGGTCATCAGCGCTTTCTACTTACTGGTGTGAAAGTGGCGCTCGAGCCAACTGACCCCGTTGCTTGTTCTTCCATGGATAAGTCACATTCTCGAGAGAAGTCTACTGAGACTAAAGTTAGACCACTGTCCGAAAGGGAATTCTCGCTGCCTTCTCCTGATGAACTCAATAGAAGCTTGTCTGTTCTAGGTGGATCTGAGGACTTTATGGCAAATAGAACATTGCTTACCGGAGGCGGAGATTCTGTTTCTGGTGGTTTTTCTCAGTGGCAAATGGATGAACTTATTAATCTGACTGGATTCAATCAGAACTATGGGTATATGGATAACGGATCATCCAAGGCTGATAGTGGTAAGCTTGGGGATTCTGATTCATCACCAGTTTTGAGAGCTGCTGACATCGAACTGGACGATGACACTGAATGCTCGGGTCAGGTTCCAGAGGCTTACTGGACAGTGCCTCAGATTCCCTCTCCACCCACAGCGTCAGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCTGTTCTTCAGAAAAGGTTCAACATTGCTCACATAATGGTACCTTCTCGAAACGAAGAAGACAGTTCTAG 897 46.6 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACSSMDKSHSREKSTETKVRPLSEREFSLPSPDELNRSLSVLGGSEDFMANRTLLTGGGDSVSGGFSQWQMDELINLTGFNQNYGYMDNGSSKADSGKLGDSDSSPVLRAADIELDDDTECSGQVPEAYWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSEKVQHCSHNGTFSKRRRQF 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24391664 24393859 - CcPI632755_07g010850.1 Cco07g1085 183738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1085 298 MobiDBLite consensus disorder prediction 115 142 - -
Cco07g1085 298 CDD Bbox1_BBX-like 56 99 IPR049808 -
Cco07g1085 298 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 280 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cco07g1085 298 MobiDBLite consensus disorder prediction 117 135 - -
Cco07g1085 298 FunFam B-box zinc finger protein 22 1 93 - -
Cco07g1085 298 Pfam B-box zinc finger 3 47 IPR000315 GO:0008270(InterPro)
Cco07g1085 298 Pfam B-box zinc finger 53 96 IPR000315 GO:0008270(InterPro)
Cco07g1085 298 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cco07g1085 298 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Cco07g1085 298 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cco07g1085 298 Gene3D Classic Zinc Finger 1 92 - -
Cco07g1085 298 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cco07g1085 298 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1775 Cco-Chr4:32691770 Cco07g1085 Cco-Chr7:24391664 6.40E-20 dispersed
Cco07g0890 Cco-Chr7:20775766 Cco07g1085 Cco-Chr7:24391664 2.20E-21 dispersed
Cco07g1085 Cco-Chr7:24391664 Cco11g0413 Cco-Chr11:4270059 4.50E-29 dispersed
Cco07g1085 Cco-Chr7:24391664 Cco02g0508 Cco-Chr2:4723704 9.20E-30 transposed
Cco07g1085 Cco-Chr7:24391664 Cco08g1639 Cco-Chr8:27887923 9.20E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59655 PF00643 zf-B_box 3.60E-07 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1085 - - - 0.0