Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g1085 | ATGAAGATTCAGTGTAACGTCTGCGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCTTGCGACGAGAAGATTCATGCAGCCAACAAGCTCGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGGCTCTTCATCTCAGATGCCTAAATGCGATATCTGCCAGGAAGCTAGTGGCTATATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGCGATGTTGCTATACACACAGCAAATACTTATGTAACTGGTCATCAGCGCTTTCTACTTACTGGTGTGAAAGTGGCGCTCGAGCCAACTGACCCCGTTGCTTGTTCTTCCATGGATAAGTCACATTCTCGAGAGAAGTCTACTGAGACTAAAGTTAGACCACTGTCCGAAAGGGAATTCTCGCTGCCTTCTCCTGATGAACTCAATAGAAGCTTGTCTGTTCTAGGTGGATCTGAGGACTTTATGGCAAATAGAACATTGCTTACCGGAGGCGGAGATTCTGTTTCTGGTGGTTTTTCTCAGTGGCAAATGGATGAACTTATTAATCTGACTGGATTCAATCAGAACTATGGGTATATGGATAACGGATCATCCAAGGCTGATAGTGGTAAGCTTGGGGATTCTGATTCATCACCAGTTTTGAGAGCTGCTGACATCGAACTGGACGATGACACTGAATGCTCGGGTCAGGTTCCAGAGGCTTACTGGACAGTGCCTCAGATTCCCTCTCCACCCACAGCGTCAGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCTGTTCTTCAGAAAAGGTTCAACATTGCTCACATAATGGTACCTTCTCGAAACGAAGAAGACAGTTCTAG | 897 | 46.6 | MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACSSMDKSHSREKSTETKVRPLSEREFSLPSPDELNRSLSVLGGSEDFMANRTLLTGGGDSVSGGFSQWQMDELINLTGFNQNYGYMDNGSSKADSGKLGDSDSSPVLRAADIELDDDTECSGQVPEAYWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSEKVQHCSHNGTFSKRRRQF | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 24391664 | 24393859 | - | CcPI632755_07g010850.1 | Cco07g1085 | 183738 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g1085 | 298 | MobiDBLite | consensus disorder prediction | 115 | 142 | - | - | |
Cco07g1085 | 298 | CDD | Bbox1_BBX-like | 56 | 99 | IPR049808 | - | |
Cco07g1085 | 298 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 280 | IPR051979 | GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER) | |
Cco07g1085 | 298 | MobiDBLite | consensus disorder prediction | 117 | 135 | - | - | |
Cco07g1085 | 298 | FunFam | B-box zinc finger protein 22 | 1 | 93 | - | - | |
Cco07g1085 | 298 | Pfam | B-box zinc finger | 3 | 47 | IPR000315 | GO:0008270(InterPro) | |
Cco07g1085 | 298 | Pfam | B-box zinc finger | 53 | 96 | IPR000315 | GO:0008270(InterPro) | |
Cco07g1085 | 298 | CDD | Bbox1_BBX-like | 5 | 47 | IPR049808 | - | |
Cco07g1085 | 298 | ProSiteProfiles | Zinc finger B-box type profile. | 52 | 99 | IPR000315 | GO:0008270(InterPro) | |
Cco07g1085 | 298 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270(InterPro) | |
Cco07g1085 | 298 | Gene3D | Classic Zinc Finger | 1 | 92 | - | - | |
Cco07g1085 | 298 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270(InterPro) | |
Cco07g1085 | 298 | SMART | bboxneu5 | 52 | 99 | IPR000315 | GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1775 | Cco-Chr4:32691770 | Cco07g1085 | Cco-Chr7:24391664 | 6.40E-20 | dispersed | |
Cco07g0890 | Cco-Chr7:20775766 | Cco07g1085 | Cco-Chr7:24391664 | 2.20E-21 | dispersed | |
Cco07g1085 | Cco-Chr7:24391664 | Cco11g0413 | Cco-Chr11:4270059 | 4.50E-29 | dispersed | |
Cco07g1085 | Cco-Chr7:24391664 | Cco02g0508 | Cco-Chr2:4723704 | 9.20E-30 | transposed | |
Cco07g1085 | Cco-Chr7:24391664 | Cco08g1639 | Cco-Chr8:27887923 | 9.20E-30 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59655 | PF00643 | zf-B_box | 3.60E-07 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g1085 | - | - | - | 0.0 |