Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g1090 | ATGACGTCGGGGACGAGGCTACCGACATGGAGGGAGCGGGAGAACAACAAGAGAAGAGAGAGAAGGAGAAGAGCTATTGCGGCAAAGATCTTTGCCGGACTCAGGATGTACGGGAACTACAAGCTTCCCAAGCATTGCGACAACAATGAGGTCCTTAAAGCTCTCTGCAATGAGGCGGGATGGACCGTCGAACCTGATGGTACCACTTACCGTAAGGGATGCAAGCCAATTGAACGTATGGATGTGGTTGGTGGATCGGCAGCTGCAAGCCCGTACGCATCTCACCAACCAAGTCCTTGTGCTTCCTTCAATCCAAGCCCCGGTTCATCTTCTTTTCCAAGTCCAGCATCATCCTCATATGTTGGTAATCCGAATGCTGATGGAAGTTCGCTTATCCCCTGGCTCAAAAACCTTTCAACGTCATCATCTTCAGCATCCTCGTCTAAACTCCCAAATCATTATATTCATGGAGGTTCCATCAGTGCTCCGGTAACTCCTCCTCTGAGTTCCCCAACTGCTAGAACGCCCCGACTCAAAGCTGACTGGGAAGACCAATCTGTCCTACCAGGATGGAGTGCACAATACTATTCCTCCCAGCCATCTTCTACTCCACCAAGTCCTGGGCGTCAGATTCTTCCCAATCCAGAATGGTTTGCTGGCCTTAGAATTCCTCAGGGTGGACCCAATTCTCCAACATTTAGTCTTGTCTCGACAAACCCATTTGGTTTCAAGGAAGCAGCAATGACTGGTGGAGGATCTCGCATGTGGACCCCTGGTCAAAGTGGGACCTGCTCTCCTGCCATTGCAGCAGGCTCCGATCACACTGCAGATATTCCAATGTCAGAAGTCATCTCTGATGAGTTCGCCTTTGGAAGCAATGCAGCAGGAATAGTGAAGCCATGGGAAGGAGAACGAATTCATGAAGAATGTGGTTCAGATGACCTAGAACTCACTCTTGGAAACTCAAGGACCAGGTAA | 978 | 49.9 | MTSGTRLPTWRERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPIERMDVVGGSAAASPYASHQPSPCASFNPSPGSSSFPSPASSSYVGNPNADGSSLIPWLKNLSTSSSSASSSKLPNHYIHGGSISAPVTPPLSSPTARTPRLKADWEDQSVLPGWSAQYYSSQPSSTPPSPGRQILPNPEWFAGLRIPQGGPNSPTFSLVSTNPFGFKEAAMTGGGSRMWTPGQSGTCSPAIAAGSDHTADIPMSEVISDEFAFGSNAAGIVKPWEGERIHEECGSDDLELTLGNSRTR | 325 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 24443012 | 24445745 | - | CcPI632755_07g010900.1 | Cco07g1090 | 183743 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g1090 | 325 | MobiDBLite | consensus disorder prediction | 88 | 122 | - | - | |
Cco07g1090 | 325 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cco07g1090 | 325 | MobiDBLite | consensus disorder prediction | 91 | 122 | - | - | |
Cco07g1090 | 325 | PANTHER | BES1/BZR1 HOMOLOG PROTEIN 3-RELATED | 1 | 325 | IPR033264 | GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro) | |
Cco07g1090 | 325 | Pfam | BES1/BZR1 plant transcription factor, N-terminal | 4 | 139 | IPR008540 | - | |
Cco07g1090 | 325 | MobiDBLite | consensus disorder prediction | 193 | 213 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0709 | Cco-Chr3:7319914 | Cco07g1090 | Cco-Chr7:24443012 | 2.30E-122 | dispersed | |
Cco07g1090 | Cco-Chr7:24443012 | Cco08g1711 | Cco-Chr8:28451073 | 1.90E-44 | dispersed | |
Cco07g1090 | Cco-Chr7:24443012 | Cco04g1688 | Cco-Chr4:32057722 | 1.80E-50 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59656 | PF05687 | BES1_N | 1.30E-65 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g1090 | - | - | - | 0.0 |