Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1090 ATGACGTCGGGGACGAGGCTACCGACATGGAGGGAGCGGGAGAACAACAAGAGAAGAGAGAGAAGGAGAAGAGCTATTGCGGCAAAGATCTTTGCCGGACTCAGGATGTACGGGAACTACAAGCTTCCCAAGCATTGCGACAACAATGAGGTCCTTAAAGCTCTCTGCAATGAGGCGGGATGGACCGTCGAACCTGATGGTACCACTTACCGTAAGGGATGCAAGCCAATTGAACGTATGGATGTGGTTGGTGGATCGGCAGCTGCAAGCCCGTACGCATCTCACCAACCAAGTCCTTGTGCTTCCTTCAATCCAAGCCCCGGTTCATCTTCTTTTCCAAGTCCAGCATCATCCTCATATGTTGGTAATCCGAATGCTGATGGAAGTTCGCTTATCCCCTGGCTCAAAAACCTTTCAACGTCATCATCTTCAGCATCCTCGTCTAAACTCCCAAATCATTATATTCATGGAGGTTCCATCAGTGCTCCGGTAACTCCTCCTCTGAGTTCCCCAACTGCTAGAACGCCCCGACTCAAAGCTGACTGGGAAGACCAATCTGTCCTACCAGGATGGAGTGCACAATACTATTCCTCCCAGCCATCTTCTACTCCACCAAGTCCTGGGCGTCAGATTCTTCCCAATCCAGAATGGTTTGCTGGCCTTAGAATTCCTCAGGGTGGACCCAATTCTCCAACATTTAGTCTTGTCTCGACAAACCCATTTGGTTTCAAGGAAGCAGCAATGACTGGTGGAGGATCTCGCATGTGGACCCCTGGTCAAAGTGGGACCTGCTCTCCTGCCATTGCAGCAGGCTCCGATCACACTGCAGATATTCCAATGTCAGAAGTCATCTCTGATGAGTTCGCCTTTGGAAGCAATGCAGCAGGAATAGTGAAGCCATGGGAAGGAGAACGAATTCATGAAGAATGTGGTTCAGATGACCTAGAACTCACTCTTGGAAACTCAAGGACCAGGTAA 978 49.9 MTSGTRLPTWRERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPIERMDVVGGSAAASPYASHQPSPCASFNPSPGSSSFPSPASSSYVGNPNADGSSLIPWLKNLSTSSSSASSSKLPNHYIHGGSISAPVTPPLSSPTARTPRLKADWEDQSVLPGWSAQYYSSQPSSTPPSPGRQILPNPEWFAGLRIPQGGPNSPTFSLVSTNPFGFKEAAMTGGGSRMWTPGQSGTCSPAIAAGSDHTADIPMSEVISDEFAFGSNAAGIVKPWEGERIHEECGSDDLELTLGNSRTR 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24443012 24445745 - CcPI632755_07g010900.1 Cco07g1090 183743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1090 325 MobiDBLite consensus disorder prediction 88 122 - -
Cco07g1090 325 MobiDBLite consensus disorder prediction 1 20 - -
Cco07g1090 325 MobiDBLite consensus disorder prediction 91 122 - -
Cco07g1090 325 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 325 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Cco07g1090 325 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 139 IPR008540 -
Cco07g1090 325 MobiDBLite consensus disorder prediction 193 213 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0709 Cco-Chr3:7319914 Cco07g1090 Cco-Chr7:24443012 2.30E-122 dispersed
Cco07g1090 Cco-Chr7:24443012 Cco08g1711 Cco-Chr8:28451073 1.90E-44 dispersed
Cco07g1090 Cco-Chr7:24443012 Cco04g1688 Cco-Chr4:32057722 1.80E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59656 PF05687 BES1_N 1.30E-65 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1090 - - - 0.0