Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1101 ATGTCTCTTCGCAGATCCTTTCTCTCTCGGAAGTTTTCTTCCAAGTTCTCCTCTAGAGATCCCAATGCTCTTGGGGGAATTCTTCCGTTGTCCGCCTCGGACTTCGATCATGCCTCCGCTCTGCCCGGAGGGAGTGGCGGCGATCGGATGCAGGCTGAATCCGCTTGGTCTTCCATGCTACCCGAGCTTCTTCGCGAGATCATTCAGCGGGTTGAGGCTTCAGAAGACTCTTGGCCTAACCGCCACAGCGTTGTTTCCTGTGCTTGTGTCTGTAAGCGTTGGCGGGATATTACTAAAGAGATCGTCAGGGCCACACCTCATTCCGGGAAAATTACTTTCCCTTCTTGCCTCAAACAGCCTGGACCAAGTGATCTTCCACATCAGTGTCTTATAAAAAGGAACAAGAAGACTTCAACATTTTTCCTTTATCTTGCCCTCACACCATCATTTACAGATAAGGGAAAATTCCTCTTAGCTGCACGGAGATATAGGCATGGAGCTCATACTGAGTATATAATATCTCTTGATGCTGAAGACTTATCCCAAGGAAGCAATGCCTATGTGGGGAAGTTAAGCTCCGATTTTCTTGGCACCAATTTTACCATTTATGACAGTCAACCACCACATAACGGTGCAAAGCCATCAAGCAGTAAATCAAGCCGCCGCTTTGCAAGCAAGCAAATTAGCCCACAAGTGTCTGCAGGTAACTTTGAGGTTGGGCAAGTCTCTTACAAATTTAATCTTTTGAAATCAAGAGGCCCAAGGCGAATGATATGCTCTCTAAAGTGCCCAGTATCAGAAGACACTGGAACCAGCAAACCTTGTGAGAACTCAAAGATGAACAAATCCGAATCTCTTTCTTCCTCATCTGGGTTGACAATCTTAAGAAACAAGGCTCCTAGGTGGCATGAGCACCTGCAATGCTGGTGCTTGAATTTTCATGGTCGGGTTACAGTAGCATCTGTTAAAAACTTTCAACTCGTCGCTACTATTGACCATAGCCAGCCAGGAGGTAAAGGGGATGAAGAAACAGTTCTACTACAGTTTGGAAAGGTAGGCGACGATACGTTTACTATGGATTATAGGCAGCCATTATCAGCTTTCCAGGCTTTCGCCATTTGCCTTACGAGCTTTGGCACGAAGCTGGCGTGCGAATACCTTCTTTTTTGGGCCGAAAGTGAAAAAGGCCGAGGGCCCATTAACGGAAAACTCCCCGATCGGCAGAAGCTCCGAGGGATCTTCTCTCTTCTGCAACGAGTTCGTTTTCGGGAAGCCGAAGTGGAAACAACAATGGAAGCAAAAAGGCGATCGAAGATGAGGATCGCCATAATCCACCCAGACCTTGGTATAGGGGGAGCTGAGAGATTGATTGTGGATGCTGCTGTTGAACTTGCTTCGCATGGACATGATGTCCATATTTTTACATCGCACCACGACAAAAATCGGTGCTTTGAGGAGACCCTTGCTGGAACGTTTCCAGTTACTGTGTATGGTGATTTCCTACCTCGCCACATCTTTTACCGCCTCCATGCAGTTTGTGCATATCTACGGTGTATTTTTGTCACTCTTTGCATGCTGTTCATGTGGCCGTCGTTTGATGTCATACTAGCAGATCAGGTTTCTGTTGTTGTTCCAATACTTAAACTAAAAAGGTCATCAAAGGTTGTATTTTATTGTCATTTTCCGGATCTCTTACTGGCCAAGCACACGACCATTTTGAGGAGGCTGTACAGAAAACCCATAGACTTCATTGAAGAATTGACAACCGGCATGGCAGATTTGATATTGGTTAATAGCAAATTTACGGCGTCCACTTTTGCCAAGACATTCAAACATCTTAATGCACAAGGAATTCGACCTGCTGTTCTTTATCCAGCTGTCAATGTAGATCAGTTTGATGAGCCCCATTCTTCTAAGTTGAGTTTTCTTTCTATCAACCGTTTTGAAAGGAAGAAAAACATTGAATTAGCTATCTCAGCCTTTGCTAAGCTTGGCACACTTGAAGGAGGCACTCTTCAAGATTACAATGTAGCTGATGTTTCCTTGGTCATTGCTGGTGGCTTTGATAAACGGCTAAGAGAGAATGTTGAATACTTGGAGGAGCTCAGGAATTTAGCTGAAAGAGAAGGTGTATCCGAACGTGTTACCTTCATCACATCCTGCTCAACACTTGAAAGAAACGCCCTCCTTTCCCAATGTCTGTGTGTCCTCTACACCCCAAAGGATGAACACTTCGGCATTGTTCCTTTGGAAGCCATGGCAGCTTACAAGCCTGTTATTGCATGCAACAGTGGGGGTCCAGTCGAGACCATAAAACATGGCGCTACCGGATTTCTTTGTTCGCCTAATCCTCGAGAGTTCTCTGTGGCAATGGCGAAACTCATTCAGGATCCTGCCATGGCAGCAAGAATGGGTAGGGAAGCCCGACAACACATCATCGAATCTTTCTCTACAAAGATATTTGGTCAGCAACTGAATCAATACCTTGTCGATGTCGCTCGACTTAAGAGAGACTGA 2517 45.57 MSLRRSFLSRKFSSKFSSRDPNALGGILPLSASDFDHASALPGGSGGDRMQAESAWSSMLPELLREIIQRVEASEDSWPNRHSVVSCACVCKRWRDITKEIVRATPHSGKITFPSCLKQPGPSDLPHQCLIKRNKKTSTFFLYLALTPSFTDKGKFLLAARRYRHGAHTEYIISLDAEDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSKSSRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMICSLKCPVSEDTGTSKPCENSKMNKSESLSSSSGLTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATIDHSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACEYLLFWAESEKGRGPINGKLPDRQKLRGIFSLLQRVRFREAEVETTMEAKRRSKMRIAIIHPDLGIGGAERLIVDAAVELASHGHDVHIFTSHHDKNRCFEETLAGTFPVTVYGDFLPRHIFYRLHAVCAYLRCIFVTLCMLFMWPSFDVILADQVSVVVPILKLKRSSKVVFYCHFPDLLLAKHTTILRRLYRKPIDFIEELTTGMADLILVNSKFTASTFAKTFKHLNAQGIRPAVLYPAVNVDQFDEPHSSKLSFLSINRFERKKNIELAISAFAKLGTLEGGTLQDYNVADVSLVIAGGFDKRLRENVEYLEELRNLAEREGVSERVTFITSCSTLERNALLSQCLCVLYTPKDEHFGIVPLEAMAAYKPVIACNSGGPVETIKHGATGFLCSPNPREFSVAMAKLIQDPAMAARMGREARQHIIESFSTKIFGQQLNQYLVDVARLKRD 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24564774 24573897 - CcPI632755_07g011010.1 Cco07g1101 183754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1101 838 PANTHER ALPHA-1,3/1,6-MANNOSYLTRANSFERASE ALG2 434 834 IPR027054 GO:0000033(PANTHER)|GO:0004378(InterPro)|GO:0006486(InterPro)|GO:0006490(PANTHER)|GO:0012505(PANTHER)
Cco07g1101 838 Pfam F-box domain 56 99 IPR001810 GO:0005515(InterPro)
Cco07g1101 838 Gene3D Glycogen Phosphorylase B; 636 832 - -
Cco07g1101 838 Gene3D Tubby Protein; Chain A 112 385 IPR025659 -
Cco07g1101 838 CDD F-box_AtTLP-like 56 100 - -
Cco07g1101 838 Pfam Glycosyl transferases group 1 638 810 IPR001296 GO:0016757(InterPro)
Cco07g1101 838 SUPERFAMILY Tubby C-terminal domain-like 107 385 IPR025659 -
Cco07g1101 838 FunFam alpha-1,3/1,6-mannosyltransferase ALG2 635 817 - -
Cco07g1101 838 CDD GT4_ALG2-like 439 825 - -
Cco07g1101 838 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 439 829 - -
Cco07g1101 838 Pfam Glycosyltransferase Family 4 450 630 IPR028098 -
Cco07g1101 838 ProSitePatterns Tub family signature 1. 313 326 IPR018066 -
Cco07g1101 838 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Cco07g1101 838 PRINTS Tubby superfamily signature 363 385 IPR000007 -
Cco07g1101 838 PRINTS Tubby superfamily signature 342 361 IPR000007 -
Cco07g1101 838 PRINTS Tubby superfamily signature 313 329 IPR000007 -
Cco07g1101 838 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Cco07g1101 838 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Cco07g1101 838 PRINTS Tubby superfamily signature 295 312 IPR000007 -
Cco07g1101 838 ProSitePatterns Tub family signature 2. 370 385 IPR018066 -
Cco07g1101 838 FunFam alpha-1,3/1,6-mannosyltransferase ALG2 436 634 - -
Cco07g1101 838 Coils Coil 689 709 - -
Cco07g1101 838 Gene3D Glycogen Phosphorylase B; 435 635 - -
Cco07g1101 838 MobiDBLite consensus disorder prediction 205 225 - -
Cco07g1101 838 Pfam Tub family 117 380 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1101 Cco-Chr7:24564774 Cco08g0837 Cco-Chr8:20209781 1.20E-98 dispersed
Cco07g1101 Cco-Chr7:24564774 Cco05g0677 Cco-Chr5:5583842 1.20E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59657 PF01167 Tub 3.50E-102 CL0395 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1101 K03843 - csv:101211733 776.548