Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1105 ATGGCAATTTCCCATTTAGTACCTTTTTATTCGCCTCTTCTACGCTTTTCTCTCGCTTCGACAAAGCTCCCTCCTCAACTCCATTCTCACAGATACCGCTTCTTCTCCCTCCGTGCTTCTATGGCGTCTTCACCTGCTCGCAAGGTTTTGGTTCCGGTTGCCAACGGCACCGAGCCGCTTGAGGCAGTCATCACCATTGACGTGCTTCGACGTGCTGGAGCTGATGTTACCGTTGCTTCCGTCGAGAATCATATTCGTGTTGATGCTGCGCATCAGATCAAGATTGTTGCGGATTCTCTCATTTCCGATTGCGCGGATACTGTTTTTGATCTCATCGCCCTTCCTGGAGGTATGCCAGGTGCTACCAGTCTTAGAGATTGTGAAGTTTTGCAGAACATAGTGAAGAAGCAAGCTGCAGATGGTCGACTTTATGCTGCCATCTGTGCTTCACCTGCAGTGGTGCTTGGATCATGGGGTTTGCTGAAGGGGTTGAAAGCCACATGCTATCCATCATTTATGGAGCAACTGGGATCTACTGCAACTGCTGTTGAATCCCGAGTACAGATTGATGGCCAAGTTGTGACAAGTCGTGGGCCTGGTACTACCTTGGAGTTTGCCGTTGCTCTGGTTGAGCAGTTGTATGGGAAAGAAAAAGGCGACGAAGTTTCTGGACCTCTGTTGTTGCGTTCCAACCATGGTCATGAATATACCATAGCTGAGCACAATCAAGTAAAGTGGACATTTGATGATGGCCCAAGGATTCTTGTACCTATAGCTACTGGTACTGAGGAAATGGAGGCTGTTATGATCATTGACATTCTTCGAAGAGCAAAAGGGAAAGTGGTGGTGGCTTCTGTTGAGGACAAACTAGAGATTCTTGCATCTCGAAAAGTTAAACTGGAGGCAGATTTACTTCTTGACGAAGCTGCTGAAAAGTCATACGATCTAATTGTTTTGCCTGGAGGGCTTGGTGGCGCGGAAGCATTTGCAAAATCTGAAAAACTGATTAATTTGCTAAAAAAGCAGAGAGAATCAAACAAACCCTATGGAGCAATATGTGCATCCCCGGCTTTGGTCTTAGAACCCCACGGCTTGCTGAAGAATAAGAAAGCCACTGCTTTTCCTGCATTATGTGACAAATTGTCCGACAAAAGCGAAATTGAAAACAGAGTGGTGGTTGACGGAAACCTGATTACAAGCCGGGGACCTGGAACTACGATGGAATTTTCTCTGGCAATCGTGGAGAAGCTTTTTGGAAGGGATACAGCAGTTCAACTGGGAAAAACAATGTTGAACTCGGTTCGTGTTGCGGTTTACTTCTTTTCGCGTTTGGCGGCTCAGGAAACCACGACTAAACAAGGCTCTGTTGTTATCTCTCTTTCCGTGAGAGAGGAGGCAATTTCTTCAAGCTCTCTCCATCAGGTCAGAACTGTCGGAGACTTGTTGCGGTCGAGTTCAAAAAGAAACAGAGATTCATCGGATGCCCAAACAATTGCAGCAGTTGAAGAGATTTCAAATATTCCGAACGTTCGCTTGTACTCATACGAAGAACTTAGAAAAGCAACTGAAAATTTCAGGTCTGGAAACAAACTTGGGCAGGGAGGTTTTGGATCTGTCTACAAGGGAAGGCTCGGAAATGGAACCCTGGGTGCCATAAAGGTACTGTCCATGGATTCAAGCCAAGGGATGCGGGAGTTTTTGGCAGAAATCAATGTGATCTCAGTTATAAACCACGATAACTTGGTTAAGTTGCACGGTTGTTGTGTGGAAGGGCAGCACCGGATCTTGGTCTATCCGTACCTAGAAAATAGCAGTCTTGACAAGATGCTTTTTGGTAGAGGACATGGGAATATTCACTTAAATTGGCAAACAAGGTGCAAAATATGCATTGGCATCGCACAGGGGCTAGCGTTCCTTCATGAGGAGGTTCAGCCGCATGTTATACATAGGGACATCAAGGCAAGCAATATCCTGCTTGATAAGGATTTAACCCCAAAAATTTCTGATTTTGGTCTTGCTAGACTACTCCCTGCTCACTTGACCCATGTTAGTACACGTGTTGCCGGGACAGCAGGTTATCTTGCACCTGAATTTGCTATACGGGGGCAAGCGACAAGAAGAACAGATATTTATAGTTTTGGTGTCTTACTCTTGGAGATTGTTTGTGGGAGATACAACATAAATAGACGGTTTTCTGCTGAGGAACCATATCTTCTTGAAATGGTATGGGAGCATCATGAGAAAGGGCAATTGCTGGAATTGGTAGACCTATCATTACATGGAGACTATGGGACTGAGGAGGCCTGCAGATATTTAAAAGTTGGTCTTCTCTGCACCCAAGATATGCCAAAACTCCGTCCATCTATGTCGACCGTCGTCAAGATGCTAACAGGTGATATTGATATATCTGATCAAACAATATCAAGACCAGGAATGCTTTCAGAGTTCATGCTTCGAAAAGATGTACTATGCAAGAAGGGCGAGTCAACAACTGAAGACTCAGGAAAGCCAATTGATTCAACTTCATCATCAGGATACATTGACACCTCACATGCTACAATAACCTTCAATTCGATATTTGATCGTAGTAACTGA 2595 44.97 MAISHLVPFYSPLLRFSLASTKLPPQLHSHRYRFFSLRASMASSPARKVLVPVANGTEPLEAVITIDVLRRAGADVTVASVENHIRVDAAHQIKIVADSLISDCADTVFDLIALPGGMPGATSLRDCEVLQNIVKKQAADGRLYAAICASPAVVLGSWGLLKGLKATCYPSFMEQLGSTATAVESRVQIDGQVVTSRGPGTTLEFAVALVEQLYGKEKGDEVSGPLLLRSNHGHEYTIAEHNQVKWTFDDGPRILVPIATGTEEMEAVMIIDILRRAKGKVVVASVEDKLEILASRKVKLEADLLLDEAAEKSYDLIVLPGGLGGAEAFAKSEKLINLLKKQRESNKPYGAICASPALVLEPHGLLKNKKATAFPALCDKLSDKSEIENRVVVDGNLITSRGPGTTMEFSLAIVEKLFGRDTAVQLGKTMLNSVRVAVYFFSRLAAQETTTKQGSVVISLSVREEAISSSSLHQVRTVGDLLRSSSKRNRDSSDAQTIAAVEEISNIPNVRLYSYEELRKATENFRSGNKLGQGGFGSVYKGRLGNGTLGAIKVLSMDSSQGMREFLAEINVISVINHDNLVKLHGCCVEGQHRILVYPYLENSSLDKMLFGRGHGNIHLNWQTRCKICIGIAQGLAFLHEEVQPHVIHRDIKASNILLDKDLTPKISDFGLARLLPAHLTHVSTRVAGTAGYLAPEFAIRGQATRRTDIYSFGVLLLEIVCGRYNINRRFSAEEPYLLEMVWEHHEKGQLLELVDLSLHGDYGTEEACRYLKVGLLCTQDMPKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLCKKGESTTEDSGKPIDSTSSSGYIDTSHATITFNSIFDRSN 864
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24612574 24627542 + CcPI632755_07g011050.1 Cco07g1105 183758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1105 864 Gene3D Phosphorylase Kinase; domain 1 496 600 - -
Cco07g1105 864 NCBIfam DJ-1 family glyoxalase III 253 426 IPR006287 -
Cco07g1105 864 NCBIfam DJ-1 family glyoxalase III 48 223 IPR006287 -
Cco07g1105 864 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1105 864 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 452 825 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cco07g1105 864 SUPERFAMILY Class I glutamine amidotransferase-like 47 228 IPR029062 -
Cco07g1105 864 SMART serkin_6 525 796 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1105 864 Pfam Protein tyrosine and serine/threonine kinase 528 793 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1105 864 ProSiteProfiles Protein kinase domain profile. 525 807 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1105 864 CDD GATase1_DJ-1 254 417 - -
Cco07g1105 864 SUPERFAMILY Class I glutamine amidotransferase-like 253 431 IPR029062 -
Cco07g1105 864 FunFam Protein DJ-1 homolog C 246 435 - -
Cco07g1105 864 CDD STKc_IRAK 531 798 - -
Cco07g1105 864 Gene3D - 248 438 IPR029062 -
Cco07g1105 864 Gene3D - 40 241 IPR029062 -
Cco07g1105 864 Pfam DJ-1/PfpI family 253 415 IPR002818 -
Cco07g1105 864 Pfam DJ-1/PfpI family 47 212 IPR002818 -
Cco07g1105 864 Gene3D Transferase(Phosphotransferase) domain 1 601 807 - -
Cco07g1105 864 CDD GATase1_DJ-1 49 213 - -
Cco07g1105 864 FunFam Putative LRR receptor-like serine/threonine-protein kinase 601 808 - -
Cco07g1105 864 SUPERFAMILY Protein kinase-like (PK-like) 504 796 IPR011009 -
Cco07g1105 864 Coils Coil 283 303 - -
Cco07g1105 864 FunFam Serine/threonine-protein kinase receptor 495 600 - -
Cco07g1105 864 FunFam Protein DJ-1 homolog C 41 231 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1105 Cco-Chr7:24612574 Cco09g2464 Cco-Chr9:38806239 2.10E-90 dispersed
Cco02g0655 Cco-Chr2:6537978 Cco07g1105 Cco-Chr7:24612574 1.30E-99 transposed
Cco04g1093 Cco-Chr4:26373135 Cco07g1105 Cco-Chr7:24612574 5.30E-90 transposed
Cco07g1143 Cco-Chr7:25145907 Cco07g1105 Cco-Chr7:24612574 4.20E-129 transposed
Cco11g1781 Cco-Chr11:30512746 Cco07g1105 Cco-Chr7:24612574 5.40E-82 wgd
Cco04g2164 Cco-Chr4:35379808 Cco07g1105 Cco-Chr7:24612574 3.70E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86975 PF00069 Pkinase 2.20E-43 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1105 K03152 - csv:101212934 773.852