Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1108 ATGCCGCAAGATCATCCAAATAAGGATGCCAAAGAAATAAACTTTTTTACTGAATATGGGGATGCTAACAGATATAAGATTCTTGAAGTTGTTGGAAGGGGAAGTTATGGAGTTGTTTGTTCTGCTATTGACATGCAAACTGGGGAGAAGGTTGCAATAAAGAGAATTCATGATATTTTTGATCACGCATCTGATGCTATTCGAATCCTTCGTGAAGTTAAGTTGCTTAGATTGTTGCGGCATCCTGATATTGTTGACATCAAGCGTATTATGTTACCACCTTCTAAAAAGGAATTTAGGGACATTTATGTGGTTTTTGAGCTTATGGAATCTGATCTTCATCAAGTTATTAAAGCAAATGATGACTTGACGCGTGAACATCATCAATTTTTCCTCTATCAAATGCTACGTGCATTGAAATTCATGCATACAGCAAATGTCTATCATAGAGATCTGAAGCCGAAGAATATATTGGCAAATGCGAATTGCAAGCTTAAAATTTGTGATTTTGGGCTTGCAAGAGTTGCTTTCAGTGACACCCCAACTACTGTATTTTGGACAGACTATGTTGCTACTCGATGGTACAGAGCTCCAGAGTTGTGTGGATCATTCTGTTCCAAGTATACTCCTGCGATAGATATTTGGAGTGTCGGCTGCATATTTGCTGAGGTTTTGATGGGGAAGCCACTGTTTCCGGGTAAAAGCGTTGCCCATCAATTGGACTTGATTACTGATCTTCTTGGGACTCCCTCATTGGAAACCATTGCAGGAGTTCGGAATGAAAAGGCCAGGAAATATTTGACAGAAATGAGAAAGAAATCTGCAGTGCCATTTTCACAAAGATTTCCCAATGCAGATCCTACAGCCATCCGCTTATTGCAAAGACTATTAGCATTTGATCCAAAGGATCGACCATCGGCTGTGGAGGCTCTGGCTGATCCTTACTTTAAGGGCCTAGCTAAAGTTGAAAGAGAGCCTTCTTGTCAACCAATCTCAAGAGCGGAATTTGAGTTTGAGAGACGGAAATTAACAAGGGATGATGTGAGGGAATTGTTATACAGAGAAATTTTAGAATATCATCCTCAAATTCGTGAAGATTACTTGAATGGAACTGAGACTACAAAGCTCCTTTATCCTAGCGTTACAGGTCATTTTAAAAGCCAATTCCCCTTCCACAAGGAGAATAATGGTAAAAGCGCACCTGTTTTGCCTCTAGAACGGAAACACTTCTCCCTGCCACGGTCCACTGTTTGCACAAATTTGGCTTCACCTGATCGTGAACCCGTTCGACGAAATCCCAAAGTCTTTAATAATAGTATGGGATTACCTGATAGAAAATTTGTGAATCCATCAAAGGCTCATCCTCCACCTAAAGTGCCTACTGGACGAGTTGCTGGGCCTGTCCTCCCTTATGAGCACAGAAACATAAAAGATGTTTATTCGAACCTAACGTCACAAATTAGAAGTTTGGATTTCTGA 1479 40.43 MPQDHPNKDAKEINFFTEYGDANRYKILEVVGRGSYGVVCSAIDMQTGEKVAIKRIHDIFDHASDAIRILREVKLLRLLRHPDIVDIKRIMLPPSKKEFRDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFCSKYTPAIDIWSVGCIFAEVLMGKPLFPGKSVAHQLDLITDLLGTPSLETIAGVRNEKARKYLTEMRKKSAVPFSQRFPNADPTAIRLLQRLLAFDPKDRPSAVEALADPYFKGLAKVEREPSCQPISRAEFEFERRKLTRDDVRELLYREILEYHPQIREDYLNGTETTKLLYPSVTGHFKSQFPFHKENNGKSAPVLPLERKHFSLPRSTVCTNLASPDREPVRRNPKVFNNSMGLPDRKFVNPSKAHPPPKVPTGRVAGPVLPYEHRNIKDVYSNLTSQIRSLDF 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24651475 24655331 + CcPI632755_07g011080.1 Cco07g1108 183761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1108 492 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1108 492 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524(InterPro)
Cco07g1108 492 FunFam Mitogen-activated protein kinase 111 339 - -
Cco07g1108 492 SUPERFAMILY Protein kinase-like (PK-like) 20 320 IPR011009 -
Cco07g1108 492 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Cco07g1108 492 SMART serkin_6 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1108 492 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1108 492 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1108 492 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Cco07g1108 492 FunFam Mitogen-activated protein kinase 14 119 - -
Cco07g1108 492 MobiDBLite consensus disorder prediction 423 464 - -
Cco07g1108 492 CDD STKc_TDY_MAPK 24 361 - -
Cco07g1108 492 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 22 357 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1964 Cco-Chr2:32571013 Cco07g1108 Cco-Chr7:24651475 8.10E-206 dispersed
Cco07g1108 Cco-Chr7:24651475 Cco09g2440 Cco-Chr9:38590643 1.00E-203 dispersed
Cco04g2163 Cco-Chr4:35364142 Cco07g1108 Cco-Chr7:24651475 3.40E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86976 PF00069 Pkinase 5.20E-65 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1108 - - - 0.0