Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1127 ATGGCCGCGGTTGCTGAGGATTCCAGTGAGGCAGCGGCTGCCAAGAATTTTGATCCTAACATGAATCCCAAATCAGAATTTGATGCTCATAAGCTTGCTGAAATGTTCAGCAATTTGAACCCTTTAGCCAAGGAGTTTTTTCCTTCCTCTTACTCTCATCATGATCGCCAAGATTTTCATTTTTATTATCAAAACGATAATCGATCGTTGGCCAAGAACTTTCAGGTCGCCGATCAACTTTTGCACAGTGATAACAATCGCAGGAGAAGGCCTGACTTTAATAACCAGGGGAGAAGAAGAATGAATAATAATAGATCTGTCAGAGCTCAACAAGAGGAAAGTATAAGGAGGACTGTTTATGTCTCTGATATCGATAAGGATGTCTCTGAAGAGGAGCTTGCCAAGGTATTCAGGGAGTTTTGTGGTTATGTTAATGATTGCCGAATATGTGGAGACCCCCATTCAGTTCTTCGTTTTGCTTTTGTGGAGTTTGCTAATGAGCATAGTGCTAGAGCAGCCATAGGCCTTAGTGGGACGGTGGTAGGGTCTTATCCAGTTAAGGTACTACCTTCAAAGACTGCCATTCTTCCTGTGAATCCTACCTTTCTCCCCAAGTCAAATGATGAATGGGATATGTGTACAAGAACTATCTATTGCACAAATATTGATAAGAAGGTATCTCAGGCTGAAGTTAAGAGTTTCTTTGAAACATCATGTGGTGAGGTAACTCGCTTGAGGTTGTTGGGTGATCAGTTGCATTCGACCCGTATAGCTTTTGTTGAGTTTGCTCTGGCCGAGACTGCTCTTCAAGCTCTTAATTGTAGTGGCATGATCTTGGGTGCTCAACCAATCAGGGTAAGTCCGTCTAAGACGCCTGTTAGGCCACGAGTTACTCGCCCGGGTAGCATTAAGCCATCTTGA 921 43.32 MAAVAEDSSEAAAAKNFDPNMNPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHHDRQDFHFYYQNDNRSLAKNFQVADQLLHSDNNRRRRPDFNNQGRRRMNNNRSVRAQQEESIRRTVYVSDIDKDVSEEELAKVFREFCGYVNDCRICGDPHSVLRFAFVEFANEHSARAAIGLSGTVVGSYPVKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQAEVKSFFETSCGEVTRLRLLGDQLHSTRIAFVEFALAETALQALNCSGMILGAQPIRVSPSKTPVRPRVTRPGSIKPS 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24868089 24875503 - CcPI632755_07g011270.1 Cco07g1127 183780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1127 306 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 86 297 - -
Cco07g1127 306 Gene3D - 64 194 IPR012677 -
Cco07g1127 306 Pfam Ataxin-2 C-terminal region 35 50 IPR009818 -
Cco07g1127 306 SUPERFAMILY RNA-binding domain, RBD 205 299 IPR035979 GO:0003676(InterPro)
Cco07g1127 306 MobiDBLite consensus disorder prediction 81 111 - -
Cco07g1127 306 Pfam RNA recognition motif 119 186 IPR000504 GO:0003723(InterPro)
Cco07g1127 306 Pfam RNA recognition motif 217 284 IPR000504 GO:0003723(InterPro)
Cco07g1127 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 291 IPR000504 GO:0003723(InterPro)
Cco07g1127 306 SMART rrm1_1 118 189 IPR000504 GO:0003723(InterPro)
Cco07g1127 306 SMART rrm1_1 216 287 IPR000504 GO:0003723(InterPro)
Cco07g1127 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 193 IPR000504 GO:0003723(InterPro)
Cco07g1127 306 FunFam Polyadenylate-binding protein-interacting protein 10 209 287 - -
Cco07g1127 306 MobiDBLite consensus disorder prediction 82 96 - -
Cco07g1127 306 SUPERFAMILY RNA-binding domain, RBD 101 194 IPR035979 GO:0003676(InterPro)
Cco07g1127 306 Gene3D - 211 287 IPR012677 -
Cco07g1127 306 MobiDBLite consensus disorder prediction 1 22 - -
Cco07g1127 306 MobiDBLite consensus disorder prediction 97 111 - -
Cco07g1127 306 CDD RRM2_CID8_like 211 292 IPR034825 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1127 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1127 Cco-Chr7:24868089 Cco07g1813 Cco-Chr7:32234207 5.40E-78 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g910 . . . . . . . Bma13g00905 Cmo16g00493 Cmo04g00693 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g00770 Blo07g00996 . Bda05g00815 Bda12g00790 . . . . . . . Cma04g00645 Cma16g00458 Car04g00600 Car16g00416 Cpe14g00386 Cpe01g00582 . . . . . . . Cla07g01001 Cam07g1077 Cec07g1149 Cco07g1127 Clacu07g1051 Cmu07g1042 Cre07g1417 . . Chy07g01020 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004204 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43