Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1131 ATGAGCTGCTCCTGCGATAAGGAACGCAAGTTTGCTGATGGTAGGAACAGATTCAGACGTATAGAGCCGAGTTTACTGAGTCAGAAGCGGCGGAACGGCCCCCCACTCGGTCTCAAAAACCTAGGCAATACCTGCTATCTCAACAGCGTCCTTCAGTGTCTAACTTACACCCCTCCTCTTGCCAATTTCTGCCTCCGCAACCAGCACTCCTCTCTCTGCGATTCTGCTTCCTCCGACGCCGACCGAAAGCGCGAATGTCCGTTTTGCATTCTGGAGAGGCGGATAGTGAGGTCTTTGAGCTTGGATCTCACCTTGGACTCGCCTTTCAAGATCCAGAACTGTCTCAGGATCTTCGCCGAGCATTTTCGCTTGGGCCGTCAGGAGGACGCCCACGAGTTCCTTCGCTATGTCATCGACGCTTGTCACAACACCTGCCTCCGCTTGAAGAAGCTGCGTCGAAATGGCAGCTACAATGGTGGAGCTACCAGTGGAAGCTCCACGGTCGTGAAGGAAATTTTCGGGGGTGCCTTGCAGAGCCAGGTGAAGTGTTTATCTTGTGGAAACGACTCCAATAAGGTTGACGAGATAATGGATATTAGTCTTGATGTTTTGCATAGTAGTTCTCTTAAAGAGGCATTGCAGAAGTTCTTTCAACTGGAAATTTTAGATGGCAGTAATAAGTACAAGTGTGACAACTGTAAGAAGTTGGTCGTGGCTAGGAAGCAGATGTCAATACTCCAAGCACCAAATATACTTGTCATCCAATTGAAGAGATTTGAAGGCATATTTGGCGGTAAGATTGACAAGCCCATTGCGTATGAGGAGAGTTTGCAGCTTTCAAATTTCATGTGCAAAGGAAGTCAGGATTTGCGGCCAGAGTACAAGCTCTTTGGTACCATAGTGCATTCAGGCTTCTCTGCAGAATCTGGACATTATTATGCATATATCAAGGATGCATCGGGTAGGTGGTATTGCTGCAATGACTCATTTGTTACAGTTTCAACTCTGCAGGAGGTTTTGTCAGAAAAGGTTTATATTCTCTTTTTCTCTCGTACAAACCAAAGGCCAGTAACTGCCAGCACAGCTCTTGCTTCCAATGGTGTAAAATCCCATGAATGTAATGGCAGTGATGGATCGAAAATCTCAAAACCTTCTGTTGTAACTAAAACAACAACACAGACAAGATCCCATGTTGAGCAATCCTCTCGGAAGGAACTTTCAAATTTATCTAAGGTAGATAAACCAACTTTCAGCCCACGAGGAAAGTCTAATATGAATGGACATTCTGATATGAATGGACATTCTAATTCCATACGAGCTCCTTCCACCATTAACGGAAAGATTGTTCTTGAGAAGGATCAATCCATCAAGGAGAAGGGGAAAGAGAATGTTAACTCGTTGCCTCTGGAAAATGGTGCAAGACGTAAATCTTCTGTTGGGAATGGAAATAGCAGGAAAAATTTTGAAGTTGATCATGATGTCACCGAGAGAGGACAAAAATCTGTTTTAATGAATAGTAATGGTAATGGTGGGAGTATGGGAATGAAAGCAGATAAACATGACCTATGTGGCAATAATCCTATGAATAACAAGTTCACTGCAGGAAGAGGGTCTGGTCATGATGAAGTGGATAATTCAGTCAACTGCTCCTCTGAGGTCAAAACGGCCAAAAGAAAGTCAGACTTCTGTATCTTGTTTCAACAGGATGCTCAATCTCGGCAAAGAGTTGAAGAGCTGAAACAGAATCTCAAGAGAGAAACTTTATCAGTTTTACGATCATGCGGTTGGTTAGAGGAGGTCTTCAGTTGCATGCGTTCAAGGAAGAGATTATGTTTACGGGAAATGGACAGCACCCCAAGTAGTAATGATTTAAAGAAATTGCTGATTGCAGATGCCAAACAAAAGTTTATTTCACGGATACCAGAACCTCTAAAAGAAGACCTTATTAAAAAGCTTCAACTATTTAGCCAAGAAAAGCAAACTGCGGGAGTGAAACATATCTATGCTTTCATTGAGTTAACATTTTTACCATCATTCGAAAGTCGTTCGGGATGGAGCTGTTCTGAAAGTAGAAGGCAAACAGCTGAGACTCAGTTGATGATATCTCTTTGCTCTATCACCAAGTTGATCACAGCTCAAGTTTACATTAAAATTTCTCTTTATGGATGGAGTCTGTCATCTTATCCAACCACCCCGAAGTGCAAGGGGTTGCAGCTTCTGCCTGCTTCTTCTCCAAACTCAAATGAGGCACTTTCCTCAACAATGGAAGAATAG 2274 43.36 MSCSCDKERKFADGRNRFRRIEPSLLSQKRRNGPPLGLKNLGNTCYLNSVLQCLTYTPPLANFCLRNQHSSLCDSASSDADRKRECPFCILERRIVRSLSLDLTLDSPFKIQNCLRIFAEHFRLGRQEDAHEFLRYVIDACHNTCLRLKKLRRNGSYNGGATSGSSTVVKEIFGGALQSQVKCLSCGNDSNKVDEIMDISLDVLHSSSLKEALQKFFQLEILDGSNKYKCDNCKKLVVARKQMSILQAPNILVIQLKRFEGIFGGKIDKPIAYEESLQLSNFMCKGSQDLRPEYKLFGTIVHSGFSAESGHYYAYIKDASGRWYCCNDSFVTVSTLQEVLSEKVYILFFSRTNQRPVTASTALASNGVKSHECNGSDGSKISKPSVVTKTTTQTRSHVEQSSRKELSNLSKVDKPTFSPRGKSNMNGHSDMNGHSNSIRAPSTINGKIVLEKDQSIKEKGKENVNSLPLENGARRKSSVGNGNSRKNFEVDHDVTERGQKSVLMNSNGNGGSMGMKADKHDLCGNNPMNNKFTAGRGSGHDEVDNSVNCSSEVKTAKRKSDFCILFQQDAQSRQRVEELKQNLKRETLSVLRSCGWLEEVFSCMRSRKRLCLREMDSTPSSNDLKKLLIADAKQKFISRIPEPLKEDLIKKLQLFSQEKQTAGVKHIYAFIELTFLPSFESRSGWSCSESRRQTAETQLMISLCSITKLITAQVYIKISLYGWSLSSYPTTPKCKGLQLLPASSPNSNEALSSTMEE 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24995670 25007769 + CcPI632755_07g011310.1 Cco07g1131 183784

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1131 757 CDD Peptidase_C19E 35 350 - -
Cco07g1131 757 MobiDBLite consensus disorder prediction 411 443 - -
Cco07g1131 757 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 294 312 IPR018200 GO:0004843(InterPro)
Cco07g1131 757 FunFam Ubiquitin carboxyl-terminal hydrolase 25 30 354 - -
Cco07g1131 757 MobiDBLite consensus disorder prediction 368 514 - -
Cco07g1131 757 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 36 352 IPR028889 -
Cco07g1131 757 Pfam Ubiquitin carboxyl-terminal hydrolase 37 349 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Cco07g1131 757 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 30 417 IPR050164 GO:0004843(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0016579(PANTHER)
Cco07g1131 757 Gene3D Cysteine proteinases 30 354 - -
Cco07g1131 757 MobiDBLite consensus disorder prediction 470 485 - -
Cco07g1131 757 MobiDBLite consensus disorder prediction 368 397 - -
Cco07g1131 757 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 37 52 IPR018200 GO:0004843(InterPro)
Cco07g1131 757 SUPERFAMILY Cysteine proteinases 29 351 IPR038765 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1131 K11855 - - csv:101218797 1160.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1505 Cco-Chr2:27641689 Cco07g1131 Cco-Chr7:24995670 1.50E-23 dispersed
Cco02g2408 Cco-Chr2:36448190 Cco07g1131 Cco-Chr7:24995670 3.30E-08 dispersed
Cco07g1131 Cco-Chr7:24995670 Cco11g1502 Cco-Chr11:27838018 2.00E-57 dispersed
Cco07g1131 Cco-Chr7:24995670 Cco08g1329 Cco-Chr8:25169370 3.10E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g945 . . . . . . . . . Cmo04g00689 . Cma09g00749 . . . . Cpe02g00634 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe03g00860 . . . . Cmo09g00741 . Cma16g00463 Car04g00597 Car16g00419 Cpe14g00389 Cpe01g00579 . . . . . . . Cla07g01006 Cam07g1081 Cec07g1153 Cco07g1131 . Cmu07g1046 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004811 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 41