Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1136 ATGGAGGACGATTACTCTATCTTCCCTCCCGATTCAGATCTCGATTTCAGCTTCACGTCCACCGCCACCGACCGCACCTTCACCACCTCCTCCAGCGCTCGAACCAGCCTTGCTCGGAGCAGTCTAACACTCAGCTTCAATGAATCTCGTCTCTCTGCCGCTGCAGCCGCCGCTGCCGTTGTTAACCTCCGCCCCCACCGCCACTCCGACCCTCACTGGTCCGCCATTAAAGCCGCTACTACTCTCTCTTCCGACGGCCATCTTCACCTCCGCCACCTCAAACTCATCCGCCATCTCGGTACCGGCAACCTAGGCCGTGTTTTCTTATGCCATTTGAGAGACAACGATCACGCCAGTTTCGCTTTGAAGGTGGTGGATAAGGAGGCTCTTAGTAATAAGAAGCTTTTGCAGGTCCAAACGGAAGCCGAGATTCTCGCTTCCTTGGACCACCCTTTTCTCCCAACTCTCTACGCGCGTCTCGACGTCTCTCACTACACGTGCCTCCTTATCGACTATTGTCCTGCCGGTGACCTCCATTCACTCCTCCGCAAACAGCCTGGTAACCGTCTTTCTGTCGCGGGGGCGAGATTCTTTGCCGCCGAGATCCTGGTGGCGCTCGAGTACCTTCACGCGCTTGGGATTGTGTACCGCGATCTCAAGCCTGAGAACGTTCTTTTGCGTGAGGATGGCCACGTCATGCTCTCGGATTTCGACTTGTGTTTTAAATCCGACGTGGTACCCACTTTTCATACGTGGACTCACCCGGGACCACAGCCTACTGCCTGCTGCTTTGGATGGAAGACGGCGGAGGAGGAAGAGGAGATTGTCGGGGAGTTTGTGGCGGAGCCGACAGCGGCGTTTTCGAAGTCGTGCGTAGGGACTCATGAGTACTTGGCGCCCGAGTTAGTGACCGGTGGTGGCCACGGAAACGGCGTCGACTGGTGGGCGTTTGGGGTGTTCGTTTACGAGCTTCTGCACGGGACGACGCCGTTTAAAGGAGTGAATAAGGAGGGTACGTTAAGGAACATTGCGTCGTCGGAGGGGGTGAAGTTCCGGGCGGCGGCGGCGGAGGAAGAGGAAGGGATGGCGGACGCGAGAGATCTAATAGAGAAGCTGCTAGTGAAAGATCCGGCGAGGCGGTTGGGTTCCGGGAAAGGGGCGACGGAGATCAAACGGCATCCGTTCTTCGACGGGATAAAATGGCCGTTGATCAGGACATATCGGGCGCCGGAGGTGTATGGGCTGATGAGAAAAGCCAGATCCCACGTGAGCCACGTGACAGGCGTGACCCACCGCATGCGGCGGCGGGGCTGGTGGAACTGGAGGAAGCTCATTAGCAACCGTTTAATTAAAAATGGAAGTTCAAGTAAATCTCATACCAATACCAATTATTATAGTTATAGTTCCAAAAATAAGACGGGTTGA 1425 55.65 MEDDYSIFPPDSDLDFSFTSTATDRTFTTSSSARTSLARSSLTLSFNESRLSAAAAAAAVVNLRPHRHSDPHWSAIKAATTLSSDGHLHLRHLKLIRHLGTGNLGRVFLCHLRDNDHASFALKVVDKEALSNKKLLQVQTEAEILASLDHPFLPTLYARLDVSHYTCLLIDYCPAGDLHSLLRKQPGNRLSVAGARFFAAEILVALEYLHALGIVYRDLKPENVLLREDGHVMLSDFDLCFKSDVVPTFHTWTHPGPQPTACCFGWKTAEEEEEIVGEFVAEPTAAFSKSCVGTHEYLAPELVTGGGHGNGVDWWAFGVFVYELLHGTTPFKGVNKEGTLRNIASSEGVKFRAAAAEEEEGMADARDLIEKLLVKDPARRLGSGKGATEIKRHPFFDGIKWPLIRTYRAPEVYGLMRKARSHVSHVTGVTHRMRRRGWWNWRKLISNRLIKNGSSSKSHTNTNYYSYSSKNKTG 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25050990 25052414 - CcPI632755_07g011360.1 Cco07g1136 183789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1136 474 ProSiteProfiles Protein kinase domain profile. 93 396 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1136 474 CDD STKc_phototropin_like 91 412 - -
Cco07g1136 474 SMART serkin_6 93 396 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1136 474 Pfam Protein kinase domain 95 241 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1136 474 Pfam Protein kinase domain 288 396 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1136 474 FunFam Serine/threonine-protein kinase OXI1 177 244 - -
Cco07g1136 474 MobiDBLite consensus disorder prediction 452 474 - -
Cco07g1136 474 Gene3D Transferase(Phosphotransferase) domain 1 177 243 - -
Cco07g1136 474 Gene3D Transferase(Phosphotransferase) domain 1 288 409 - -
Cco07g1136 474 FunFam Serine/threonine-protein kinase OXI1 286 414 - -
Cco07g1136 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1136 474 SUPERFAMILY Protein kinase-like (PK-like) 69 425 IPR011009 -
Cco07g1136 474 PANTHER FLIPPASE KINASE 1-RELATED 36 415 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco07g1136 474 Gene3D Phosphorylase Kinase; domain 1 93 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1136 Cco-Chr7:25050990 Cco11g0307 Cco-Chr11:3089334 4.20E-93 dispersed
Cco07g1136 Cco-Chr7:25050990 Cco02g2354 Cco-Chr2:35959367 3.90E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86977 PF00069 Pkinase 8.90E-54 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1136 - - - 0.0