Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1143 ATGAACATGAAATGGACCAACGTCATCGATTTGTTGGTTGAAAAAATGAAGGCAGCTATTTGGTTTAAGGCTACGAATTCTCTCAGCTCACCTTCTAAGATTTCAGTATTTAAAAGGGTAAAACCCCCAACAAGAAGTTTGGTCGATGAAGAAGAATTTTCAAGCATGCAAAATGTTAAATTTTACACATACAAAGAGCTAAAAGTTGCAACTGAAGATTTCAGCTTGGCGAATAAAATAGGGGAGGGAGGTTTTGGTTCTGTCTACAAGGGAAAGCTAAAAGATGGAAAGATTGCTGCCATAAAAGTTCTTTCGGCTGAGTCAAGACAAGGATTGAGGGAATTCTTGACAGAAATTAATGTCATCTCTGTGATAGAACATGAAAATCTGGTTCAGCTTTATGGCTGCTGTGTGGATGATAATCATAGAATTCTTGTCTACAATTACCTTGAGAACAATAGCCTCGCCCAAACTCTTCTTGGGCGAGGTTACAGTAGCATCCAGTTTAATTGGCAAACAAGGTCTAAGATTTGCATTGGAATTGCACGTGGCCTTGCCTTCCTTCACGAGGATGTACAGCCACATATCATTCATAGAGATATCAAAGCGAGCAACATTCTTCTTGATCACGACCTCTCTCCTAAAATTTCAGATTTTGGTCTTGCAAAGCTTATTCCAGCCAGCATGACTCACGTCAGTACACGAGTGGCAGGAACAATTGGTTACCTAGCTCCAGAATATGCGATAAGAGGGCAGGTGACAAGAAAATCAGATATTTACAGTTTTGGAGTCCTCCTTGTGGAAATAGTCAGCGGGAGATGCAACACAAATACACAATTACCAATTGGAGAACAATATCTTCTTGAAAGGACATGGAATCTTTATGAGCGAGGAGAGCTCGTTCTGCTAGTTGATTTGTCCTTAAATGGCGACTTCGATGCAGAGGAGGCTTGTAAATATCTAAAGATTGGTCTACTTTGCACACAAGACAGTCCAAAACTCCGTCCATCCATGTCGACTGTGGTAAAGATGCTAACAGGAGAGATGAGTATTGAAGACAGAAAGATAACGAAACCGGGGCTGATTTCGGACTTCATGGATCTAAAAGTAAAGAATCCAGAGGAAAAGAAAGGGAATAGAGAGGGGGTGTCTTCTGATAGTCTATCCTCTGGATCAAACATCCTTGGAAATTCAACAATGTCATCTGAAGCCTCAACTGTTACATCTACAACCTTCACTGCACAATATGACAGGAATACTTTCTCATCTGTAATGTGA 1278 40.53 MNMKWTNVIDLLVEKMKAAIWFKATNSLSSPSKISVFKRVKPPTRSLVDEEEFSSMQNVKFYTYKELKVATEDFSLANKIGEGGFGSVYKGKLKDGKIAAIKVLSAESRQGLREFLTEINVISVIEHENLVQLYGCCVDDNHRILVYNYLENNSLAQTLLGRGYSSIQFNWQTRSKICIGIARGLAFLHEDVQPHIIHRDIKASNILLDHDLSPKISDFGLAKLIPASMTHVSTRVAGTIGYLAPEYAIRGQVTRKSDIYSFGVLLVEIVSGRCNTNTQLPIGEQYLLERTWNLYERGELVLLVDLSLNGDFDAEEACKYLKIGLLCTQDSPKLRPSMSTVVKMLTGEMSIEDRKITKPGLISDFMDLKVKNPEEKKGNREGVSSDSLSSGSNILGNSTMSSEASTVTSTTFTAQYDRNTFSSVM 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25145907 25150256 - CcPI632755_07g011430.1 Cco07g1143 183796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1143 425 ProSitePatterns Protein kinases ATP-binding region signature. 80 102 IPR017441 GO:0005524(InterPro)
Cco07g1143 425 SMART serkin_6 74 345 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1143 425 SUPERFAMILY Protein kinase-like (PK-like) 54 345 IPR011009 -
Cco07g1143 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1143 425 Pfam Protein kinase domain 76 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1143 425 MobiDBLite consensus disorder prediction 373 409 - -
Cco07g1143 425 MobiDBLite consensus disorder prediction 383 409 - -
Cco07g1143 425 CDD STKc_IRAK 80 347 - -
Cco07g1143 425 FunFam cold-responsive protein kinase 1 150 361 - -
Cco07g1143 425 FunFam cold-responsive protein kinase 1 45 149 - -
Cco07g1143 425 Gene3D Phosphorylase Kinase; domain 1 45 149 - -
Cco07g1143 425 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 42 381 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cco07g1143 425 Gene3D Transferase(Phosphotransferase) domain 1 150 359 - -
Cco07g1143 425 ProSiteProfiles Protein kinase domain profile. 74 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0605 Cco-Chr3:6168150 Cco07g1143 Cco-Chr7:25145907 3.90E-92 dispersed
Cco04g1093 Cco-Chr4:26373135 Cco07g1143 Cco-Chr7:25145907 2.20E-99 dispersed
Cco07g1143 Cco-Chr7:25145907 Cco10g2184 Cco-Chr10:34958252 2.40E-92 dispersed
Cco07g1143 Cco-Chr7:25145907 Cco07g1105 Cco-Chr7:24612574 4.20E-129 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86978 PF00069 Pkinase 3.70E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1143 - - - 0.0