Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1164 ATGCTTCGCAGCTTAATTCCTCATTCCCCCATCAATTCCACCTCCAATTCCCCATCCTCCATGAACTCCAAACGCTCCGACCCCGACTCCTCCCCCGACCACCCTTCTTCCAAGAGGCTCAATTCACGTCCCAACAACTTCTCCGCCCCTGGTAAGGCCGTCCACCACCCAGACTTCGACGAAGACCAAGAGGACCCGCCTCTCGTCGACGGCAGTGACTCCACTGGTTTGAGATTGCTAGGGCTTCTCCTTCAATGCGCCGAGTGCGTCGCCATCGATAATCTCCAGGAGGCCAACGATCTCTTGCCGGAGATCTCCGAGCTCTCCTCGCCCTTTGGAACCTCGCCTGAGCGAGTCGGCGCGTACTTCGCCCACGCGCTTCAAGCCAGAGTTATAAGCTCCTGCTTGGGAACATACTCGCCGTTAACCATCAGAACGTTGAATCAAACTCAGTCGCAGAGAATTTTCAACGCCCTCCAATCCTACAATTCCATCAGTCCGTTGATTAAGTTCTCTCACTTTACCGCCAATCAAGCCATCTTCCAAGCCTTGGACGGTGAAGATCGAGTCCACGTGATCGACCTCGACGTAATGCAAGGTCTCCAATGGCCTGGATTGTTCCACATCCTCGCTTCCCGGCCAAAGAAGATCCAATCCCTACGAATCTCCGGCTTCGGATCCTCTTCCGAGTTGCTTCAATCAACCGGAAGAAGACTGGCGGATTTTGCAACTTCTCTAGGTCTCCCCTTCGAATTCCATCCAGTGGAAGGCAAAATCGGAAATCTAACAAACCCCAATCAACTGGAATTAAGAGCCGGCGAGACAGTTGTAGTTCACTGGATGCACCATTGCTTATACGACGTAACAGGAAGCGATATAGGTACGCTTAGATTACTTTCAACTCTAAAACCAAAACTAATCACCATTGTTGAACAAGATCTGAGTCATGGAGGTAGTTTTTTAGGAAGATTTGTAGAGGCTCTTCATTATTACAGCGCGTTGTTCGACGCGCTTGGTGATAGTTTAACCATGGATAATCTGGAAAGACATGTGGTAGAGCAACAATTGTTTGGTTGTGAGATTAGGAACATTATCGCCGTTGGTGGACCCAAAAGAACCGGTGAAGTTAAAGTCGAAAGATGGGGCGATGAACTGAAACGGGTCGGGTTTAAACCCGTTTCTCTTGGAGGTAACCCGGCTGCTCAAGCCAGTTTACTTCTTGGAATGTTTCCTTGGAAAGGCTATACTCTTGTTGAAGAAAATGGGTGCCTTAAACTTGGATGGAAGGACCTATCTCTTCTCACAGCCTCCGCCTGGCAGCCCTCCGATTGA 1332 49.92 MLRSLIPHSPINSTSNSPSSMNSKRSDPDSSPDHPSSKRLNSRPNNFSAPGKAVHHPDFDEDQEDPPLVDGSDSTGLRLLGLLLQCAECVAIDNLQEANDLLPEISELSSPFGTSPERVGAYFAHALQARVISSCLGTYSPLTIRTLNQTQSQRIFNALQSYNSISPLIKFSHFTANQAIFQALDGEDRVHVIDLDVMQGLQWPGLFHILASRPKKIQSLRISGFGSSSELLQSTGRRLADFATSLGLPFEFHPVEGKIGNLTNPNQLELRAGETVVVHWMHHCLYDVTGSDIGTLRLLSTLKPKLITIVEQDLSHGGSFLGRFVEALHYYSALFDALGDSLTMDNLERHVVEQQLFGCEIRNIIAVGGPKRTGEVKVERWGDELKRVGFKPVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQPSD 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25370241 25371572 + CcPI632755_07g011640.1 Cco07g1164 183817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1164 443 Pfam GRAS domain family 81 440 IPR005202 -
Cco07g1164 443 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 45 439 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0048366(PANTHER)|GO:0090610(PANTHER)
Cco07g1164 443 MobiDBLite consensus disorder prediction 7 26 - -
Cco07g1164 443 ProSiteProfiles GRAS family profile. 70 440 IPR005202 -
Cco07g1164 443 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0775 Cco-Chr4:22928426 Cco07g1164 Cco-Chr7:25370241 1.20E-134 dispersed
Cco07g1164 Cco-Chr7:25370241 Cco09g0795 Cco-Chr9:7374142 1.90E-87 dispersed
Cco07g1164 Cco-Chr7:25370241 Cco10g2105 Cco-Chr10:34362288 1.00E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59660 PF03514 GRAS 2.00E-116 CL0063 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1164 K27742 - csv:101212169 744.962