Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco07g1172 | ATGAGTTCTTCAATGAAGGGAAACAATAGGATGTCCGTTGCCATGGAGAGAACGGGACAATGGATTTTCTCTCAAGACATTCCGACTGATGTCGTGGTTGCGGTCGGGGAAGCACATTTTCCTCTTCACAAGTTCATGTTGGTAGCAAAGAGCAACTACATAAGGAAATTGATAATGGAATCGACGGACGCAGATCTAACAAGGATCGATCTGACGGACATTCCCGGCGGTGCTGAGATTTTCGAGAAGGCAGCGAAATTTTGCTACGGTGTGAACTTCGAGATCACGGTGCACAACGTGGCGGCGCTCCGATGTGCTGCAGAGTATCTGCAAATGACCGACAATTACTCCGACAACAACCTCGTCGGTCGGACCGAAGATTTCCTCTCTCAGGTGGCTCTCACCAGCCTTTCTGGAGCCATAGTCGTTCTTAAATCTTCCCACCATCTTCTTCCCATGGCTGAAGACCTTTACATTGTCCATAGATGTGTGGATGTTATCAGTTCCAAGGCTTGCAACGAGGCGAACTTCCCAAGTCGATCACCTCCAAATTGGTGGACAGAGGAGCTAACCATAATCGACATCCAATTCTTCGCCAAAATCATAACTGCAATGAAATCTCGTGGCGCCAAAGCCTCAACTCTCTCCGCCGCTCTAATCACGTACGCCGAGAGATCTCTCCGCGATCTACTCCGCGACCACTCAGGCACCGCCCCTATCGACGATTCCGGCACCAGCAGAACCAAACAACGAGAGCTCCTGGAATCAATAGTTTGTCTCTTACCTCCGGACAAAGCCGCATTCCCAATTAACTTCCTGTGCTGCCTACTCCGATCTGCGATTTACCTGAAAACAAGCATGGGGTGCAAGAACGAGGTGGAGAAGAGGATTTCGATGGTGCTGGAACATTTGAGCGTAGATGATTTGCTGGCAATGTCGTTCACGTACGACGGGGAGAGGCTGGTGGAGTTGGAAAGTATAAGGAGGATAATATTGGGATTTGTGGAAAGGGAGAAGAGCGTGGCGGTGTTTAATGCCGGAGATCTGAAAGAGGTTTGCTCTGTTTCGTTGCAAAGAGTGGGGAAGACGGTGGATGCGTATTTGGGGGAGATTGCTACTTATACCCAACTCAGCATATCCAAATTTAATGGGATTGCTAATATAATACCCAAATTTGCACGCAAGGTTGATGATGATCTTTATAGAGCTATTGATATTTATCTCAAGGCACACCCAAATCTGGATGAGATCGAACGGGAGAAGGTATGCAGTGTGATGGACCCGTTGAAGCTATCGTACGAAGCGCGAGTACATGCTTCGCAGAACAAGCGATTGCCGGTGCAAATAGTCCTTCATGCACTCTACTACGATCAGCTGAAGCTAAGAAGCGGCACGGCGGAGGAGCGGAGCGCCCACGACGCGGCCATGACAAGGAATCAAGCACAGGCAGATGTGTCATTAGTGAAAGAGAATGAGGCATTGAGGTGTGAGTTAATGAAGATGAAGCTTTACATATCTGACATGCACAAGAATTCTCAAGGAACATCTTCCATGAAAGCACCACCCTCTAGAACCAAGCCCACCTTCTTCTCCACAGTCTCTAAAACACTTGGCAAATTAAATCCCTTCCGTCATGGTTCTAAAGACACTTCTAATATCGTTGACGCTGTCGACATTACGAAGCCCAGGAGGAGAAGGTTGGTGTGTCTATTGGGAATGGCAATGGCGGCCACTTCCCTTTCGAACCTGCCTTCTGCTCTCTTCCATGGAAATCTGCAGAGAAATGAATTTGGGTCTGTGGGTATGCGGAGACAACCCACCAAGTATCTCAAATCCAATCTTAGAGCTCCGGTTGTGAGATGCCAATCAACTGAAGTTGATGGACCGAAAACGAAAAGAAATCTGCTCGACAATGCCAGCAATCTTCTTACCAATTTGTTAAGTGGTGGAAATTTGGGATCTATGCCGATAGCTGATGGTGCAGTCTCTGATTTGTTCGGCCGCCCACTCTTCTTTGCACTGTATGATTGGTTCTTAGAGCATGGATCTGTTTATAAACTTGCCTTTGGACCAAAAGCCTTTGTTGTCGTATCAGATCCTATTGTGGCAAGATATATTCTTCGTGAAAACGCATTTGGTTATGACAAGGGAGTGCTTGCTGATATTCTGGAACCAATAATGGGTAAAGGACTAATACCAGCTGATCTTGACACTTGGAAGCAGAGGAGACGAGTTATAGCTCCTGGATTCCATGCCTTATACTTGGAAGCTATGACCAAAGTCTTCACTGATTGTTCAGAACGATCAATACTGAAATTGGAAAAGCTTCTAGGAGAAGGTGAACTTCAGGAGGATAAAACCATTGAGTTGGATATGGAAGCAGAGTTTTCGAGTTTGGCTCTTGATATCATTGGACTTGGTGTTTTCAACTATGATTTTGGTTCTGTAACCAAAGAATCCCCAGTGATTAAGGCTGTATATGGAACCCTTTTTGAAGCAGAGCATAGATCAACTTTCTATATTCCATACTGGAAAGTACCTTTGGCAAGGTGGATAGTCCCAAGGCAGCGTAAATTCCACAGTGACCTTAAGGTTATTAATGACTGTCTTGATGGACTAATACGAAATGCAAGAGAAACCCGAGAGGAAGCCGATGTTGAGAAATTGCAGCAAAGGGACTATTTAAATCTCAAGGATGCCAGTCTTTTGCGTTTCTTAGTTGATATGCGGGGAGTTGATGTCGATGATCGGCAGCTTCGGGACGATCTGATGACAATGCTTATTGCCGGGCATGAAACAACTGCTGCTGTGCTTACATGGGCTGTTTTTTTGCTTGCCCAAAACCCTTCAAAAATGAAAAAAGCTCAGGCAGAGATCGATTTGGTTCTTGGCAAGGGAAGGCCAACTTTTGAATTACTTAAAGGATTGAAGTACATCAGACTTATCGTCGCAGAGACTCTTCGTTTGTTTCCTCAGCCACCCTTGCTAATAAGACGCGCTCTCAAACTGGATACATTGCCAGGAGGATACAATGGTGACAAAAATGGATATGCAATACCTGCAGGAACTGACATCTTCATCTCTGTTTACAATCTCCACAGATCTCCATACTTCTGGGAAAACCCTCAAGAATTTGAACCAGAGAGATTTCAAGTAAAGAAGGGAAGCGAGGGAATTGAAGGATGGGATGGTTTTGACCCATCAAGAAGCCCTGGAGCTCTATACCCAAACGAGATTGTATCAGACTTTTCCTTCTTACCATTTGGTGGAGGACCTAGAAAATGTGTGGGGGATCAATTTGCTCTAATGGAGTCAACTATAGCACTGGCCATGTTACTGCAGAAGTTTGATGTGGAACTAAGAGGAAGCCCAGAATCTGTGGAACTTGTTACTGGGGCCACTATACATACCAAAGGTGGCTTGTGGTGCAAACTGAAAAGAAGATCACAAGACCAACTACAAGATTCTCAGAATCGCTTGCAAAATTTCATGGTAGTAAGAGAGCCTCAAGAAGAAATATACTTGTTAAAAGGACTCGGGCAGACCTGGGATTATTACACCAACTTGGCTGACATAAAAGGAATGTGTTATCTGTCAAATTTGTGGTTTAGAGATGTAAAAAGTTACCTAGGAAGTATGGGTATGAATGTGAGATAA | 3657 | 45.2 | MSSSMKGNNRMSVAMERTGQWIFSQDIPTDVVVAVGEAHFPLHKFMLVAKSNYIRKLIMESTDADLTRIDLTDIPGGAEIFEKAAKFCYGVNFEITVHNVAALRCAAEYLQMTDNYSDNNLVGRTEDFLSQVALTSLSGAIVVLKSSHHLLPMAEDLYIVHRCVDVISSKACNEANFPSRSPPNWWTEELTIIDIQFFAKIITAMKSRGAKASTLSAALITYAERSLRDLLRDHSGTAPIDDSGTSRTKQRELLESIVCLLPPDKAAFPINFLCCLLRSAIYLKTSMGCKNEVEKRISMVLEHLSVDDLLAMSFTYDGERLVELESIRRIILGFVEREKSVAVFNAGDLKEVCSVSLQRVGKTVDAYLGEIATYTQLSISKFNGIANIIPKFARKVDDDLYRAIDIYLKAHPNLDEIEREKVCSVMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGTAEERSAHDAAMTRNQAQADVSLVKENEALRCELMKMKLYISDMHKNSQGTSSMKAPPSRTKPTFFSTVSKTLGKLNPFRHGSKDTSNIVDAVDITKPRRRRLVCLLGMAMAATSLSNLPSALFHGNLQRNEFGSVGMRRQPTKYLKSNLRAPVVRCQSTEVDGPKTKRNLLDNASNLLTNLLSGGNLGSMPIADGAVSDLFGRPLFFALYDWFLEHGSVYKLAFGPKAFVVVSDPIVARYILRENAFGYDKGVLADILEPIMGKGLIPADLDTWKQRRRVIAPGFHALYLEAMTKVFTDCSERSILKLEKLLGEGELQEDKTIELDMEAEFSSLALDIIGLGVFNYDFGSVTKESPVIKAVYGTLFEAEHRSTFYIPYWKVPLARWIVPRQRKFHSDLKVINDCLDGLIRNARETREEADVEKLQQRDYLNLKDASLLRFLVDMRGVDVDDRQLRDDLMTMLIAGHETTAAVLTWAVFLLAQNPSKMKKAQAEIDLVLGKGRPTFELLKGLKYIRLIVAETLRLFPQPPLLIRRALKLDTLPGGYNGDKNGYAIPAGTDIFISVYNLHRSPYFWENPQEFEPERFQVKKGSEGIEGWDGFDPSRSPGALYPNEIVSDFSFLPFGGGPRKCVGDQFALMESTIALAMLLQKFDVELRGSPESVELVTGATIHTKGGLWCKLKRRSQDQLQDSQNRLQNFMVVREPQEEIYLLKGLGQTWDYYTNLADIKGMCYLSNLWFRDVKSYLGSMGMNVR | 1218 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 25460220 | 25473675 | - | CcPI632755_07g011720.1 | Cco07g1172 | 183825 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco07g1172 | 1218 | Pfam | Cytochrome P450 | 678 | 1138 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1172 | 1218 | PRINTS | E-class P450 group I signature | 678 | 697 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1172 | 1218 | PRINTS | E-class P450 group I signature | 938 | 964 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1172 | 1218 | PRINTS | E-class P450 group I signature | 918 | 935 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1172 | 1218 | PRINTS | E-class P450 group I signature | 1095 | 1118 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1172 | 1218 | PRINTS | E-class P450 group I signature | 1085 | 1095 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1172 | 1218 | Pfam | NPH3 family | 184 | 435 | IPR027356 | - | |
| Cco07g1172 | 1218 | FunFam | BTB/POZ domain-containing protein At1g03010 | 5 | 125 | - | - | |
| Cco07g1172 | 1218 | Gene3D | Potassium Channel Kv1.1; Chain A | 7 | 133 | IPR011333 | - | |
| Cco07g1172 | 1218 | Pfam | BTB/POZ domain | 24 | 114 | IPR000210 | GO:0005515(InterPro) | |
| Cco07g1172 | 1218 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 1088 | 1097 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco07g1172 | 1218 | SUPERFAMILY | POZ domain | 14 | 128 | IPR011333 | - | |
| Cco07g1172 | 1218 | ProSiteProfiles | NPH3 domain profile. | 184 | 460 | IPR027356 | - | |
| Cco07g1172 | 1218 | CDD | CYP97 | 672 | 1142 | - | - | |
| Cco07g1172 | 1218 | SMART | BTB_4 | 29 | 133 | IPR000210 | GO:0005515(InterPro) | |
| Cco07g1172 | 1218 | PRINTS | P450 superfamily signature | 1095 | 1106 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1172 | 1218 | PRINTS | P450 superfamily signature | 981 | 992 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1172 | 1218 | PRINTS | P450 superfamily signature | 929 | 946 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1172 | 1218 | PRINTS | P450 superfamily signature | 1086 | 1095 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1172 | 1218 | ProSiteProfiles | BTB domain profile. | 29 | 97 | IPR000210 | GO:0005515(InterPro) | |
| Cco07g1172 | 1218 | Gene3D | Cytochrome P450 | 655 | 1166 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1172 | 1218 | PANTHER | OS12G0117600 PROTEIN | 26 | 522 | IPR043454 | - | |
| Cco07g1172 | 1218 | SUPERFAMILY | Cytochrome P450 | 666 | 1148 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco04g1514 | Cco-Chr4:30564136 | Cco07g1172 | Cco-Chr7:25460220 | 9.40E-14 | dispersed | |
| Cco07g0189 | Cco-Chr7:2002128 | Cco07g1172 | Cco-Chr7:25460220 | 1.30E-102 | dispersed | |
| Cco07g1172 | Cco-Chr7:25460220 | Cco10g0748 | Cco-Chr10:11581371 | 2.20E-114 | dispersed | |
| Cco07g1172 | Cco-Chr7:25460220 | Cco02g1336 | Cco-Chr2:25303763 | 3.30E-126 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco07g1172 | K24543 | - | csv:101210292 | 1057.36 |