Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1174 ATGAATAATATTATCAAGTATAATAATCTCCTCACCAATCTTGCTCTATCTTCTCTTCTCCCTCTCCTTGCTTTCCTCTTCATGATCAATCCTACCCCTCCCTTCCTTTCCAATCTCGTCGTCTTTCGTGACTCCGTCGATTGTCATCACCACCACCATCACCATCATAAAAACGCAACTGACGAACAGGACCAAACAACGATAAGTTCTATTTGTGATAACTTTCCGACCACCCTCCTCCCACCAGAAACCACCAACACTTCTGTTTTTTGTGTTGACCGAAACGGTTGTTGCAACTTCACAACGGTTCAAGCAGCAGTCGACGCTGTGCCAAACTTGAGCTTCAAACGAAACCTAATTTGGATCAACGCTGGAATTTACTACGAGAAGGTGATGGTTCCAAAATCTAAACCAAACGTGACATTTCAAGGACAAGGCTATACAACCACCGCCATTGTTTGGAATGACACTGCCAATTCTTCCCATGGCACCTTTTATAGTGGCTCTGTCCAAGTCTTCTCTTCCAATTTTATTGCCAAGAATATAAGCTTCATGAATGTGGCGCCAATTCCAGGGCCGGGCGACATCGGAGCACAGGCGGTGGCGATTAGAATCGGCGGAGACCAGGCGGCATTTTGGAGCTGCGGATTCTTCGGCGCTCAAGACACTCTCCACGACGACCGTGGCCGCCATTACTTCAAAGATTGCTACATCCAAGGCTCCATCGATTTCATCTTCGGAAACGGAAGGTCCTTCTACGAGAGTTGCCAGTTGATTTCGATGGCGAATCCGGTCCCGCAAGGATCCAAGTTTGTGAACGGAGCGGTGACGGCGCACGGCAGAGCCTCCGCTGACGAGAACTCTGGATTTGTTTTTGTTAATTGCAGCATCGGCGGGACCGGCAGAGTGTGGCTCGGCCGCGCGTGGCGGCCGTTCTCTCGCGTCGTCTTTGCTAACACCGTCATGACGGATATTATTGCGGCGGAGGGGTGGAATGACTTTAATGACCCTGCAAGGGACCAGACAATCTTCTATGGAGAGTACAACTGCAGTGGAGCAGGAGCCAATATGAGCTCAAGGGCTCCCTTTGTTCAAAGGCTTAATGATACTCAAGTTTCCTCTTTCCTCAACTTATCCTTCATTGATGCTGACCAATGGCTCCAACCCTACTCATTGTTTTAA 1182 48.73 MNNIIKYNNLLTNLALSSLLPLLAFLFMINPTPPFLSNLVVFRDSVDCHHHHHHHHKNATDEQDQTTISSICDNFPTTLLPPETTNTSVFCVDRNGCCNFTTVQAAVDAVPNLSFKRNLIWINAGIYYEKVMVPKSKPNVTFQGQGYTTTAIVWNDTANSSHGTFYSGSVQVFSSNFIAKNISFMNVAPIPGPGDIGAQAVAIRIGGDQAAFWSCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNGRSFYESCQLISMANPVPQGSKFVNGAVTAHGRASADENSGFVFVNCSIGGTGRVWLGRAWRPFSRVVFANTVMTDIIAAEGWNDFNDPARDQTIFYGEYNCSGAGANMSSRAPFVQRLNDTQVSSFLNLSFIDADQWLQPYSLF 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25503856 25508437 + CcPI632755_07g011740.1 Cco07g1174 183827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1174 393 FunFam Pectinesterase 84 392 - -
Cco07g1174 393 SUPERFAMILY Pectin lyase-like 88 390 IPR011050 -
Cco07g1174 393 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
Cco07g1174 393 Gene3D - 88 392 IPR012334 -
Cco07g1174 393 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 65 388 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cco07g1174 393 Pfam Pectinesterase 92 383 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1174 Cco-Chr7:25503856 Cco09g2316 Cco-Chr9:37375370 2.80E-66 dispersed
Cco07g1174 Cco-Chr7:25503856 Cco08g1677 Cco-Chr8:28212450 3.80E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1174 - - - 0.0