Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco07g1185 | ATGTTCGCCTTCTCCGTTCTCCTCCTCCTCCTCGTCTTCCTTCTTTTCTTTCATTATCTTTTCAAATTCTCCGCCCCCGCTCGTCGGAAGCTTCCCCTTCCGCCGGGCTCAATGGGATGGCCCTATTTGGGTGAGACCCTCCAACTTTACTCTCAAGATCCCAATGTCTTCTTTGCCTCAAAAAAGAAGAGATATGGTCCAATTTTCAAGTCCCATATATTGGGTTATCCTTGTGTGATGGTTTCTAGTCCTGAAGCTGCTAAGTTTGTGTTGGTCACTAAAGCGCATCTCTTTAAGCCTACATTTCCAGCTAGTAAAGAGAGGATGTTGGGCAAAAATGCTATCTTCTTTCATCAAGGAGATTACCATGCTAAATTGAGGCGCCTCGTCCTCCGAACTTTCATGCCCGAGGCAATTAGAAACATCGTCCCCAGCATCGAATCCATTGCTAAAAACACTGTTCAATCATGGGATGGACAATTGATCAACACCTTTCAAGAAATGAAGATGTTCGCATTCGAGGTTTCGTTACTTTCGATATTCGGAAAAGACGAAGCTCTTTACTTCGAAGACCTCAAACGATGCTACTACATTCTCGAAAAAGGCTACAATTCGATGCCGATTAACCTACCCGGAACACTCTTCCACAAGGCCATGAAAGCAAGGAAAGAGCTAGCACATATCTTAAACAAGATCCTGTCAACCAGGAGGGAAATGAAGCGCGACCACAACGACCTCCTCGGATCTTTCATGGGTGAAAAGGAAGGCCTCACCGATGAACAGATTGCCGATAACGTCATCGGTCTCATCTTCGCTGCTCGGGACACGACCGCCAGTGTTCTAACATGGATCTTGAAGTACCTAGGAGAAAACCCAAGTGTTCTTCAAGCTGTCACTGCTGAACAAGAAGCAATAATGAAACAAAAACAGAGTGGTGATGATAATCTCACCTGGGCTGACACCAAAAACATGCCAATCACTTCAAGGGTTATTCAGGAAACCCTAAGAATGGCTTCGGTTCTATCATTTACTTTCAGAGAAGCAGTGGAAGATGTTGAATTTGATGGATATTTGATTCCAAAAGGATGGAAAGTTTTGCCTCTTTTCAGAAACATTCATCACAGCCCAGAAAATTTCCCTCAGCCTGACAAATTTGATCCTACAAGATTTGAGGTTGCTCAAAAACCCAATACCTACATGCCATTTGGCAATGGGACCCACTCTTGTCCAGGAAATGAATTAGCCAAGCTAGAGATGCTGGTTTTACTCCATCATTTAACCACCAAGTACAGGTGGAATGTAGTTGGCGCACAAGAAGGGATTCAATATGGTCCTTTTGCCCTTCCTCTCAATGGCCTTCCAATAAAAATATTTCTCAAGAAGTAA | 1386 | 43.87 | MFAFSVLLLLLVFLLFFHYLFKFSAPARRKLPLPPGSMGWPYLGETLQLYSQDPNVFFASKKKRYGPIFKSHILGYPCVMVSSPEAAKFVLVTKAHLFKPTFPASKERMLGKNAIFFHQGDYHAKLRRLVLRTFMPEAIRNIVPSIESIAKNTVQSWDGQLINTFQEMKMFAFEVSLLSIFGKDEALYFEDLKRCYYILEKGYNSMPINLPGTLFHKAMKARKELAHILNKILSTRREMKRDHNDLLGSFMGEKEGLTDEQIADNVIGLIFAARDTTASVLTWILKYLGENPSVLQAVTAEQEAIMKQKQSGDDNLTWADTKNMPITSRVIQETLRMASVLSFTFREAVEDVEFDGYLIPKGWKVLPLFRNIHHSPENFPQPDKFDPTRFEVAQKPNTYMPFGNGTHSCPGNELAKLEMLVLLHHLTTKYRWNVVGAQEGIQYGPFALPLNGLPIKIFLKK | 461 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 25711183 | 25713406 | + | CcPI632755_07g011850.1 | Cco07g1185 | 183838 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco07g1185 | 461 | Gene3D | Cytochrome P450 | 24 | 458 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1185 | 461 | SUPERFAMILY | Cytochrome P450 | 28 | 457 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1185 | 461 | CDD | CYP90-like | 63 | 458 | - | - | |
| Cco07g1185 | 461 | Pfam | Cytochrome P450 | 34 | 435 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1185 | 461 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 402 | 411 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco07g1185 | 461 | PRINTS | P450 superfamily signature | 409 | 420 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1185 | 461 | PRINTS | P450 superfamily signature | 329 | 340 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1185 | 461 | PRINTS | P450 superfamily signature | 400 | 409 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1185 | 461 | PRINTS | P450 superfamily signature | 272 | 289 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1185 | 461 | FunFam | Abscisic acid 8 | 24 | 459 | - | - | |
| Cco07g1185 | 461 | PRINTS | E-class P450 group I signature | 62 | 81 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1185 | 461 | PRINTS | E-class P450 group I signature | 399 | 409 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1185 | 461 | PRINTS | E-class P450 group I signature | 281 | 307 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1185 | 461 | PRINTS | E-class P450 group I signature | 328 | 346 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1185 | 461 | PRINTS | E-class P450 group I signature | 409 | 432 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1185 | 461 | PRINTS | E-class P450 group I signature | 368 | 392 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1185 | 461 | PRINTS | E-class P450 group I signature | 261 | 278 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco07g1185 | 461 | PANTHER | CYTOCHROME P450 26 | 32 | 430 | - | GO:0004497(PANTHER)|GO:0009687(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0016709(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco03g0136 | Cco-Chr3:1319383 | Cco07g1185 | Cco-Chr7:25711183 | 3.00E-153 | dispersed | |
| Cco07g1185 | Cco-Chr7:25711183 | Cco08g1779 | Cco-Chr8:28899018 | 2.00E-153 | dispersed | |
| Cco07g1185 | Cco-Chr7:25711183 | Cco05g2251 | Cco-Chr5:31238407 | 3.20E-159 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco07g1185 | K09843 | - | csv:101212508 | 871.307 |