Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g1193 | ATGGGATCCAGTGGAAGTAAATCGTCGAGTAGTTCGCTGCCGGCGGCGGACACTCTCTCGTGTTCTGGGAGAATCCGGAGGGGGAGATCCAAAAGCCGGAGAGTTTTCCAGTCTGCTTGCCTCGGTACCCCCTCTGGATCGCACCACAGCGACAATGACGATAATGATTCTGAAACTGAGAATAAAAAGAATGCTCATGATTATTCATCTTCAAATCAGACTGCTCAAGCATTAGATCAGATGAAAGTTGAGGGTTACAGAAGGGTTAAAGCTGAGGAATCTGTTGAAATGCCTTGCATATCATCAAACGTTATGCTTGATGGGTGGGATCAAGCAGGTGTTGCTGTTACAACCCCCAGAGCTGGAAGTACCTCTGCTCGAGTATCTTCCCTGCAGTCGTTGAACCCTTCAAGTAACTTCCTTTCTCGCTTTAGTTTCATTCCTGGTAATGTTAGCTTCAGACTTAGTAGAGCAAGCAGTTTAGGATCATCTAGATCTTATCCCGTGTCTTCAACAAATCTCTCAATGTTGAATGATGAAGACGAGCCTCATTTATCAGACAGACCTGCGAGAGGCGTGGGTGGTCAAGATGAAACTCAGCAAGGTAGGGGCTTGCTTCCTGCATCACTAGCTAGTGAAACTCATACTCAATGTTATGGAGACAGTCCTGCTAATTTTAGGTTAAATACACAACCTTCTGGTCCTTCTGATAACTTACAAGACAATCAGTCAGTTTCTTCTACCCATGACATGCCTGGTTCTTGTGATAATTCTAGAGTAGGGCCAGATGGAAACCTTGACCTTCCTCGAACTCTACCTGAAAATGAAAGCAGTGAGATTAGACAATCTGACAGACGGGCTGGATATAGGGAACCGGTTGAGCGCAATTTTCGTTTTAGTCGTACTCTTAGTGTTGGAAGACTCCGTGATAGAGTTCTTCGTCGATCATCGTTATCTGACTTCACATTTTGTCCTCCTCAACAAGAGGGAGATGAGAGAGATGCAAGTCACAGTGGCGATGACCAACATGTATGGACTGCTGAGACAAGGACTTTGGCATCTGAAGATAATGGTATGACCTCGCCAACAACATCAGGTTATCCAGCTTCTAGTCTATCCAGTTCCCTGTTCAGCACCCAAGATTTTGATGTGGAAGCTACTCGACCTAGAGAAGCTAGGTATCACGATTTGCTGGAACATAGGTCAAATTTCCTTGAACGGAGAAGAAGAATACGGTCCCAGGTTCGTGCCCTACAGCGGCTGGGAAGTCGCTTTGAGAACCTATCTGGGCATGAGAGATCGTGTATATTATCCGGTCAACATAGAACCGGTCATTGTACTTGTCGTATCAATAATCGTGACACAAATATAAACGATAACACCAGTGCTAGAGCCAGTATATCAAGAATTGTAATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCCTCCCGCCCTGCATCTTCTATTGGCTCTCTGCCTGCACCGAACGATGTTGTAGATTCTTTGCCTGTTAAATTTTATTCCAAGTTGCAAAAGCATCAAAGCGAGGAAGCTGCCCAATGCTACATATGCCTGGTTGAGTATGAGGAAGGAGATAGCATGAGAGTGTTGCCTTGCCATCACGAGTTTCACGCAGCATGTGTTGACAAGTGGTTGAAGGAGATCCACAGGGTATGTCCACTCTGTCGAGGGGACATATGCAGCAGATCTGATGCGTTATCAGACGATGTCAAGTTTTTGTTCTATAATTTGTGGTGCCTTTTTCTAAGAATCAACTTGCTAGAGTGTTGTAATGGGAGTGGATTCAATCAGTTGAGAAAATTGTTTTCACAGAGAAATATATTAGCTTTTCTCTTGCTCTTGTCCAAGGATGTGAATAAGTATCGGAAAGGGAGAGATTTGTTTGTTTACTAG | 1944 | 44.24 | MGSSGSKSSSSSLPAADTLSCSGRIRRGRSKSRRVFQSACLGTPSGSHHSDNDDNDSETENKKNAHDYSSSNQTAQALDQMKVEGYRRVKAEESVEMPCISSNVMLDGWDQAGVAVTTPRAGSTSARVSSLQSLNPSSNFLSRFSFIPGNVSFRLSRASSLGSSRSYPVSSTNLSMLNDEDEPHLSDRPARGVGGQDETQQGRGLLPASLASETHTQCYGDSPANFRLNTQPSGPSDNLQDNQSVSSTHDMPGSCDNSRVGPDGNLDLPRTLPENESSEIRQSDRRAGYREPVERNFRFSRTLSVGRLRDRVLRRSSLSDFTFCPPQQEGDERDASHSGDDQHVWTAETRTLASEDNGMTSPTTSGYPASSLSSSLFSTQDFDVEATRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGHCTCRINNRDTNINDNTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPASSIGSLPAPNDVVDSLPVKFYSKLQKHQSEEAAQCYICLVEYEEGDSMRVLPCHHEFHAACVDKWLKEIHRVCPLCRGDICSRSDALSDDVKFLFYNLWCLFLRINLLECCNGSGFNQLRKLFSQRNILAFLLLLSKDVNKYRKGRDLFVY | 647 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 25793499 | 25798766 | - | CcPI632755_07g011930.1 | Cco07g1193 | 183846 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g1193 | 647 | MobiDBLite | consensus disorder prediction | 350 | 372 | - | - | |
Cco07g1193 | 647 | MobiDBLite | consensus disorder prediction | 215 | 289 | - | - | |
Cco07g1193 | 647 | MobiDBLite | consensus disorder prediction | 161 | 202 | - | - | |
Cco07g1193 | 647 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 493 | 578 | IPR013083 | - | |
Cco07g1193 | 647 | Pfam | Ring finger domain | 530 | 573 | IPR001841 | - | |
Cco07g1193 | 647 | ProSiteProfiles | Zinc finger RING-type profile. | 531 | 573 | IPR001841 | - | |
Cco07g1193 | 647 | MobiDBLite | consensus disorder prediction | 215 | 254 | - | - | |
Cco07g1193 | 647 | MobiDBLite | consensus disorder prediction | 323 | 342 | - | - | |
Cco07g1193 | 647 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
Cco07g1193 | 647 | MobiDBLite | consensus disorder prediction | 49 | 65 | - | - | |
Cco07g1193 | 647 | FunFam | Putative RING zinc finger domain superfamily protein | 499 | 578 | - | - | |
Cco07g1193 | 647 | SUPERFAMILY | RING/U-box | 509 | 579 | - | - | |
Cco07g1193 | 647 | MobiDBLite | consensus disorder prediction | 161 | 179 | - | - | |
Cco07g1193 | 647 | SMART | ring_2 | 531 | 572 | IPR001841 | - | |
Cco07g1193 | 647 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 582 | - | - | |
Cco07g1193 | 647 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g1382 | Cco-Chr6:24328670 | Cco07g1193 | Cco-Chr7:25793499 | 2.90E-42 | dispersed | |
Cco07g1193 | Cco-Chr7:25793499 | Cco09g1187 | Cco-Chr9:11805039 | 2.70E-10 | dispersed | |
Cco07g1193 | Cco-Chr7:25793499 | Cco04g1319 | Cco-Chr4:28520901 | 1.60E-10 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g1193 | - | - | - | 0.0 |