Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1193 ATGGGATCCAGTGGAAGTAAATCGTCGAGTAGTTCGCTGCCGGCGGCGGACACTCTCTCGTGTTCTGGGAGAATCCGGAGGGGGAGATCCAAAAGCCGGAGAGTTTTCCAGTCTGCTTGCCTCGGTACCCCCTCTGGATCGCACCACAGCGACAATGACGATAATGATTCTGAAACTGAGAATAAAAAGAATGCTCATGATTATTCATCTTCAAATCAGACTGCTCAAGCATTAGATCAGATGAAAGTTGAGGGTTACAGAAGGGTTAAAGCTGAGGAATCTGTTGAAATGCCTTGCATATCATCAAACGTTATGCTTGATGGGTGGGATCAAGCAGGTGTTGCTGTTACAACCCCCAGAGCTGGAAGTACCTCTGCTCGAGTATCTTCCCTGCAGTCGTTGAACCCTTCAAGTAACTTCCTTTCTCGCTTTAGTTTCATTCCTGGTAATGTTAGCTTCAGACTTAGTAGAGCAAGCAGTTTAGGATCATCTAGATCTTATCCCGTGTCTTCAACAAATCTCTCAATGTTGAATGATGAAGACGAGCCTCATTTATCAGACAGACCTGCGAGAGGCGTGGGTGGTCAAGATGAAACTCAGCAAGGTAGGGGCTTGCTTCCTGCATCACTAGCTAGTGAAACTCATACTCAATGTTATGGAGACAGTCCTGCTAATTTTAGGTTAAATACACAACCTTCTGGTCCTTCTGATAACTTACAAGACAATCAGTCAGTTTCTTCTACCCATGACATGCCTGGTTCTTGTGATAATTCTAGAGTAGGGCCAGATGGAAACCTTGACCTTCCTCGAACTCTACCTGAAAATGAAAGCAGTGAGATTAGACAATCTGACAGACGGGCTGGATATAGGGAACCGGTTGAGCGCAATTTTCGTTTTAGTCGTACTCTTAGTGTTGGAAGACTCCGTGATAGAGTTCTTCGTCGATCATCGTTATCTGACTTCACATTTTGTCCTCCTCAACAAGAGGGAGATGAGAGAGATGCAAGTCACAGTGGCGATGACCAACATGTATGGACTGCTGAGACAAGGACTTTGGCATCTGAAGATAATGGTATGACCTCGCCAACAACATCAGGTTATCCAGCTTCTAGTCTATCCAGTTCCCTGTTCAGCACCCAAGATTTTGATGTGGAAGCTACTCGACCTAGAGAAGCTAGGTATCACGATTTGCTGGAACATAGGTCAAATTTCCTTGAACGGAGAAGAAGAATACGGTCCCAGGTTCGTGCCCTACAGCGGCTGGGAAGTCGCTTTGAGAACCTATCTGGGCATGAGAGATCGTGTATATTATCCGGTCAACATAGAACCGGTCATTGTACTTGTCGTATCAATAATCGTGACACAAATATAAACGATAACACCAGTGCTAGAGCCAGTATATCAAGAATTGTAATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCCTCCCGCCCTGCATCTTCTATTGGCTCTCTGCCTGCACCGAACGATGTTGTAGATTCTTTGCCTGTTAAATTTTATTCCAAGTTGCAAAAGCATCAAAGCGAGGAAGCTGCCCAATGCTACATATGCCTGGTTGAGTATGAGGAAGGAGATAGCATGAGAGTGTTGCCTTGCCATCACGAGTTTCACGCAGCATGTGTTGACAAGTGGTTGAAGGAGATCCACAGGGTATGTCCACTCTGTCGAGGGGACATATGCAGCAGATCTGATGCGTTATCAGACGATGTCAAGTTTTTGTTCTATAATTTGTGGTGCCTTTTTCTAAGAATCAACTTGCTAGAGTGTTGTAATGGGAGTGGATTCAATCAGTTGAGAAAATTGTTTTCACAGAGAAATATATTAGCTTTTCTCTTGCTCTTGTCCAAGGATGTGAATAAGTATCGGAAAGGGAGAGATTTGTTTGTTTACTAG 1944 44.24 MGSSGSKSSSSSLPAADTLSCSGRIRRGRSKSRRVFQSACLGTPSGSHHSDNDDNDSETENKKNAHDYSSSNQTAQALDQMKVEGYRRVKAEESVEMPCISSNVMLDGWDQAGVAVTTPRAGSTSARVSSLQSLNPSSNFLSRFSFIPGNVSFRLSRASSLGSSRSYPVSSTNLSMLNDEDEPHLSDRPARGVGGQDETQQGRGLLPASLASETHTQCYGDSPANFRLNTQPSGPSDNLQDNQSVSSTHDMPGSCDNSRVGPDGNLDLPRTLPENESSEIRQSDRRAGYREPVERNFRFSRTLSVGRLRDRVLRRSSLSDFTFCPPQQEGDERDASHSGDDQHVWTAETRTLASEDNGMTSPTTSGYPASSLSSSLFSTQDFDVEATRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGHCTCRINNRDTNINDNTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPASSIGSLPAPNDVVDSLPVKFYSKLQKHQSEEAAQCYICLVEYEEGDSMRVLPCHHEFHAACVDKWLKEIHRVCPLCRGDICSRSDALSDDVKFLFYNLWCLFLRINLLECCNGSGFNQLRKLFSQRNILAFLLLLSKDVNKYRKGRDLFVY 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25793499 25798766 - CcPI632755_07g011930.1 Cco07g1193 183846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1193 647 MobiDBLite consensus disorder prediction 350 372 - -
Cco07g1193 647 MobiDBLite consensus disorder prediction 215 289 - -
Cco07g1193 647 MobiDBLite consensus disorder prediction 161 202 - -
Cco07g1193 647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 493 578 IPR013083 -
Cco07g1193 647 Pfam Ring finger domain 530 573 IPR001841 -
Cco07g1193 647 ProSiteProfiles Zinc finger RING-type profile. 531 573 IPR001841 -
Cco07g1193 647 MobiDBLite consensus disorder prediction 215 254 - -
Cco07g1193 647 MobiDBLite consensus disorder prediction 323 342 - -
Cco07g1193 647 MobiDBLite consensus disorder prediction 1 79 - -
Cco07g1193 647 MobiDBLite consensus disorder prediction 49 65 - -
Cco07g1193 647 FunFam Putative RING zinc finger domain superfamily protein 499 578 - -
Cco07g1193 647 SUPERFAMILY RING/U-box 509 579 - -
Cco07g1193 647 MobiDBLite consensus disorder prediction 161 179 - -
Cco07g1193 647 SMART ring_2 531 572 IPR001841 -
Cco07g1193 647 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 582 - -
Cco07g1193 647 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1382 Cco-Chr6:24328670 Cco07g1193 Cco-Chr7:25793499 2.90E-42 dispersed
Cco07g1193 Cco-Chr7:25793499 Cco09g1187 Cco-Chr9:11805039 2.70E-10 dispersed
Cco07g1193 Cco-Chr7:25793499 Cco04g1319 Cco-Chr4:28520901 1.60E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1193 - - - 0.0