Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1194 ATGCTGCTGGGTTCTTCTTGTCTCCAGAAGAAGATGGCCAGTGAAAACTTTGGGTTATGGCTATTTTTTATTGCTTCTCTACAGTTTTTCCTTCAAGCACAGTGTATTAATGTGGGGATTACTTATGTTCAAGATGCTGGTATCAAAGGAGCGGTTTGTTTGGATGGAAGTCCTCCAGCTTATCACTTCAGCGACGGATTTGGCTCGGGAGTCGATAATTGGTTGATACAACTCGAGGGAGGAGGATGGTGCAACAATGTCACAACTTGCCTCCAACGCAGGGACACTCGTTTAGGATCGTCTAAGAAAATGGTTACCGAGCTTGCGTTCTCAGGAATTTTGAGCAATAAACAGAAATTCAATCCAGATTTCTATAACTGGAACAGAATCAAGGTTCGGTACTGTGATGGATCTTCTTTTACCGGAGATGTTGAAGCCGTTGATCCCGCAACCAATCTGCATTTCAGAGGAGCAAGAGTTTTTCGTGCTATCATCAATAACCTACTTGCCAAGGGAATGAAGAATGCAAAAAACGCTATTCTCTCGGGTTGTTCAGCGGGTGGATTGAGTTCCATTTTACATTGTGATAACTTCAAATCTCTACTTCCTCCTACTACTAAAGTGAAGTGTCTCTCAGATGCAGGATACTTTATCAATGCGAAAGACGTCTCTGGAGCGCAGCACATTGAAGACTTCTACAGCGACGTAGTTGCTACCCATGGTTCTGCAAAGAATTTGCCTATATCATGCACATCAAAAATGAAACCTGAGATGTGTTTCTTTCCTCAAAATGTGGTTCAGCTCATTCAGACTCCAATATTTCTTGTGAATGCAGCCTATGATTCATGGCAGATAAAGAATATACTGGCACCTGGTGTTGCTGATCCACACGGTACTTGGCACGACTGCAAGCTTGACATCAAAAACTGCTCACCCATTCAGATTCGAATCATGCAAGATTTCAGGGTTCAGTTTTTGAGTGCATTGAATGGCGTTGGAAGTTCTTTATCAAGAGGGCTGTTCATAGATTCTTGCTATGCCCATTGCCAAACCGAAATGCAGGAGACATGGTTACGAGCGGATTCTCCCATGCTGAGTAAGACGGACTTGCGACATCTTTGCAAGAGCACGCTGGTTCATTTGTTTCCATGGAAGCTTAGACGCCCAGTAGGTTTTGCTAGAATGGATTGGGCATTCGTCCACAAAGCTTGGGACAGATGGGCTTCCGCCAGCATTGGCACTTTCGGCCAGCCATTGAAAGCTGCTCTGTTGATTAATTATGATCCAACTGGACCTTCCCGCTTGCTTTCAACCATTGCAGAACGAGAAGGAATATTGCTTAATCCCATAGAGCTGAATCAGTTTGTCGATTTCATCAAACGGGACAAACCCCAAAATGAGAGTTTCAGCATTGGCTCAAATCAATACATAATGACATCAGTCCATGAGAATTGGTTTTGTGCAAGGTGCATGAACACTATAAAGCATGCTGGTGAGGGTGTGGTTATAGTGCAAACAACAGCATTTATTTTGGTTGCTATGTATGATGGTTCAATTGCAGCAGCATCTCGCGCTATGGCAGCTGCGGATCAGTTATCTTGGCAATTAGGCAGGAAAAATCTTTAG 1626 43.6 MLLGSSCLQKKMASENFGLWLFFIASLQFFLQAQCINVGITYVQDAGIKGAVCLDGSPPAYHFSDGFGSGVDNWLIQLEGGGWCNNVTTCLQRRDTRLGSSKKMVTELAFSGILSNKQKFNPDFYNWNRIKVRYCDGSSFTGDVEAVDPATNLHFRGARVFRAIINNLLAKGMKNAKNAILSGCSAGGLSSILHCDNFKSLLPPTTKVKCLSDAGYFINAKDVSGAQHIEDFYSDVVATHGSAKNLPISCTSKMKPEMCFFPQNVVQLIQTPIFLVNAAYDSWQIKNILAPGVADPHGTWHDCKLDIKNCSPIQIRIMQDFRVQFLSALNGVGSSLSRGLFIDSCYAHCQTEMQETWLRADSPMLSKTDLRHLCKSTLVHLFPWKLRRPVGFARMDWAFVHKAWDRWASASIGTFGQPLKAALLINYDPTGPSRLLSTIAEREGILLNPIELNQFVDFIKRDKPQNESFSIGSNQYIMTSVHENWFCARCMNTIKHAGEGVVIVQTTAFILVAMYDGSIAAASRAMAAADQLSWQLGRKNL 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25807149 25814592 - CcPI632755_07g011940.1 Cco07g1194 183847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1194 541 SUPERFAMILY Profilin (actin-binding protein) 404 532 IPR036140 -
Cco07g1194 541 Gene3D Dynein light chain 2a, cytoplasmic 403 540 - -
Cco07g1194 541 Pfam Profilin 437 536 IPR048278 GO:0003779(InterPro)
Cco07g1194 541 PANTHER NOTUM-RELATED 35 373 IPR004963 GO:0009505(PANTHER)|GO:0016787(InterPro)|GO:0052793(PANTHER)|GO:0071555(PANTHER)
Cco07g1194 541 Pfam Pectinacetylesterase 32 372 IPR004963 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0978 Cco-Chr5:8536849 Cco07g1194 Cco-Chr7:25807149 3.70E-95 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1194 K19882 - vvi:100245856 782.711