Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1207 ATGATCTTGTTTGTTTTTCTTCTGAGTTACTTGGCTACTCTGATACGATTTTGGACTGGACTGGATTGGATTGTTATTGTGATTGTTCTGTTTTGTTTCTTCTGGTTTGAGCAGTTTCGGGTGGAGAGTGGTTCTAGTTCTGACACCTCACCCTTGACCAGAGCCACCATGGGCATCTGTCTGGTCAAATGTTCTGGCTTGTTGGTTCTTCACGTTCTACTTCTTTGTATGACAATGAATAAAAGCACTGGCCTCACCCCTGATGGTGCGGCACTTCTAAGCTTTAGGATGGCAGTTGCCAGTTCTGATGGAGTCATCTTCCAGTGGAGACCTGAGGATCCAAACCCTTGTAACTGGACAGGAGTGGTCTGCGATCCAAAAACGAAGAGAGTAATCTCATTGAAGCTTGCAAATCACAAACTGAGTGGGTTCATTGCACCTGAACTTGGGAAGCTAGACCAATTGAAGACCCTGACTCTTTCGGACAACAACCTATATGGAACAATACCATCAGAACTGGGAAATTGCTCGCAGTTGCAGGGAATGTTCTTGCAAAGAAACTACCTAAGTGGAGCGATTCCCTATGAGCTGGGAAACCTTTCAGAGTTGGAAATGTTAGACGTTTCTAGCAACTCCCTTAGTGGAAATATCCCAACGTCCCTTGGGCATTTGGATAAGCTGGCTATTCTCAATGTTTCATCAAATTTTTTAATTGGACCAGTACCTTCTGATGGTGTTCTTTCCAAGTTTTCAGAGACTTCCTTCGTCGGAAATCGTGGTTTGTGTGGGAAACAAGTTAGCGTCATCTGCAAAGACGATAATACTGGATCTGGAACAAATCCTGAGTACCCAAGCTCAGCCCAAAATCAAATGAGGAGGAAGTATTCTGGCCGGCTGCTCATAAGTGCATCAGCAACAGTGGGTGCACTACTACTTGTTGCTCTTATGTGTTTCTGGGGTTGCTTTCTTTACAAAAGATTTGGCAAAAATGACAAGAAAGGTCTTGTGAAGGATGTTGGTGGAGGTGCATCCGTTGTGATGTTTCATGGAGACTTGCCATACTCTTCAAAAGACATCATGAAGAAGTTGGAAACCTTGAATGAGGAACACATAATCGGTTCTGGGGGTTTTGGAACGGTTTACAGGCTTGCAATGGATGATGGCAATGTATTTGCTTTGAAAAATATTGTAAAGATAAATGAGGGGTTTGATCACTTTTTTGAGAGGGAACTTGAAATTCTTGGAAGTTTGAAGCATCGGTACCTTGTTAATTTGAGAGGATATTGCAACTCTCCCACATCAAAACTGTTGATTTATGATTATCTATCTGGGGGAAGCCTTGATGAGGCCCTTCATGAAAGATCTGAGCAATTAGATTGGGACACACGCTTGAATATTATATTGGGAGCAGCAAAAGGGCTTGCTTATTTGCACCATGATTGTTCACCCAGAATCATACATCGGGATATCAAGTCAAGCAACATTTTGCTCGATGGCAATCTGGATGCTCGAGTTTCTGACTTTGGACTTGCCAAGCTTCTGGATGACGATAAATCTCACATTACAACCATTGTTGCTGGAACATTTGGTTATTTGGCCCCCGAATATATGCAAAGTGGTAGGGCAACTGAAAAGACTGATGTATATAGTTTTGGAGTTCTGGTACTTGAAGTACTGAGTGGAAAACGACCTACGGATGCATCATTTATTGAGAAAGGCCTGAACATTGTTGGCTGGTTAAATTTTCTTGTCACGGAGAATAGGCAACGAGAAATAGTTGATCCACAATGTGAAGGAGTACAGTCGGAAACTCTTGACGCATTGCTAAGGCTTGCTATTCAGTGTGTTTCTTCTAGTCCAGATGATCGACCGACTATGCACCGAGTAGTCCAGTTCTTTGAATCCGAGGTTATGACTCCATGCCCAAGTGACTTCGATGATTCCAATTCTGATTAA 1956 42.74 MILFVFLLSYLATLIRFWTGLDWIVIVIVLFCFFWFEQFRVESGSSSDTSPLTRATMGICLVKCSGLLVLHVLLLCMTMNKSTGLTPDGAALLSFRMAVASSDGVIFQWRPEDPNPCNWTGVVCDPKTKRVISLKLANHKLSGFIAPELGKLDQLKTLTLSDNNLYGTIPSELGNCSQLQGMFLQRNYLSGAIPYELGNLSELEMLDVSSNSLSGNIPTSLGHLDKLAILNVSSNFLIGPVPSDGVLSKFSETSFVGNRGLCGKQVSVICKDDNTGSGTNPEYPSSAQNQMRRKYSGRLLISASATVGALLLVALMCFWGCFLYKRFGKNDKKGLVKDVGGGASVVMFHGDLPYSSKDIMKKLETLNEEHIIGSGGFGTVYRLAMDDGNVFALKNIVKINEGFDHFFERELEILGSLKHRYLVNLRGYCNSPTSKLLIYDYLSGGSLDEALHERSEQLDWDTRLNIILGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLDDDKSHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLVTENRQREIVDPQCEGVQSETLDALLRLAIQCVSSSPDDRPTMHRVVQFFESEVMTPCPSDFDDSNSD 651
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 25920468 25933093 + CcPI632755_07g012070.1 Cco07g1207 183860
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1207 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 485 497 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1207 651 ProSitePatterns Protein kinases ATP-binding region signature. 372 394 IPR017441 GO:0005524(InterPro)
Cco07g1207 651 SUPERFAMILY L domain-like 86 249 - -
Cco07g1207 651 Gene3D Transferase(Phosphotransferase) domain 1 442 640 - -
Cco07g1207 651 SUPERFAMILY Protein kinase-like (PK-like) 350 633 IPR011009 -
Cco07g1207 651 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 214 635 IPR050647 -
Cco07g1207 651 Pfam Protein kinase domain 368 631 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1207 651 Gene3D Ribonuclease Inhibitor 86 272 IPR032675 -
Cco07g1207 651 Gene3D Phosphorylase Kinase; domain 1 342 441 - -
Cco07g1207 651 SMART serkin_6 366 633 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1207 651 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 85 247 - -
Cco07g1207 651 Pfam Leucine rich repeat 154 213 IPR001611 GO:0005515(InterPro)
Cco07g1207 651 Pfam Leucine rich repeat N-terminal domain 87 125 IPR013210 -
Cco07g1207 651 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 340 441 - -
Cco07g1207 651 ProSiteProfiles Protein kinase domain profile. 366 638 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1207 651 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 442 644 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1207 Cco-Chr7:25920468 Cco11g1674 Cco-Chr11:29582767 6.10E-228 dispersed
Cco07g1207 Cco-Chr7:25920468 Cco01g1573 Cco-Chr1:28443333 2.70E-135 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86980 PF00069 Pkinase 3.00E-47 CL0016 Cco PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1207 - - - 0.0