Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g1207 | ATGATCTTGTTTGTTTTTCTTCTGAGTTACTTGGCTACTCTGATACGATTTTGGACTGGACTGGATTGGATTGTTATTGTGATTGTTCTGTTTTGTTTCTTCTGGTTTGAGCAGTTTCGGGTGGAGAGTGGTTCTAGTTCTGACACCTCACCCTTGACCAGAGCCACCATGGGCATCTGTCTGGTCAAATGTTCTGGCTTGTTGGTTCTTCACGTTCTACTTCTTTGTATGACAATGAATAAAAGCACTGGCCTCACCCCTGATGGTGCGGCACTTCTAAGCTTTAGGATGGCAGTTGCCAGTTCTGATGGAGTCATCTTCCAGTGGAGACCTGAGGATCCAAACCCTTGTAACTGGACAGGAGTGGTCTGCGATCCAAAAACGAAGAGAGTAATCTCATTGAAGCTTGCAAATCACAAACTGAGTGGGTTCATTGCACCTGAACTTGGGAAGCTAGACCAATTGAAGACCCTGACTCTTTCGGACAACAACCTATATGGAACAATACCATCAGAACTGGGAAATTGCTCGCAGTTGCAGGGAATGTTCTTGCAAAGAAACTACCTAAGTGGAGCGATTCCCTATGAGCTGGGAAACCTTTCAGAGTTGGAAATGTTAGACGTTTCTAGCAACTCCCTTAGTGGAAATATCCCAACGTCCCTTGGGCATTTGGATAAGCTGGCTATTCTCAATGTTTCATCAAATTTTTTAATTGGACCAGTACCTTCTGATGGTGTTCTTTCCAAGTTTTCAGAGACTTCCTTCGTCGGAAATCGTGGTTTGTGTGGGAAACAAGTTAGCGTCATCTGCAAAGACGATAATACTGGATCTGGAACAAATCCTGAGTACCCAAGCTCAGCCCAAAATCAAATGAGGAGGAAGTATTCTGGCCGGCTGCTCATAAGTGCATCAGCAACAGTGGGTGCACTACTACTTGTTGCTCTTATGTGTTTCTGGGGTTGCTTTCTTTACAAAAGATTTGGCAAAAATGACAAGAAAGGTCTTGTGAAGGATGTTGGTGGAGGTGCATCCGTTGTGATGTTTCATGGAGACTTGCCATACTCTTCAAAAGACATCATGAAGAAGTTGGAAACCTTGAATGAGGAACACATAATCGGTTCTGGGGGTTTTGGAACGGTTTACAGGCTTGCAATGGATGATGGCAATGTATTTGCTTTGAAAAATATTGTAAAGATAAATGAGGGGTTTGATCACTTTTTTGAGAGGGAACTTGAAATTCTTGGAAGTTTGAAGCATCGGTACCTTGTTAATTTGAGAGGATATTGCAACTCTCCCACATCAAAACTGTTGATTTATGATTATCTATCTGGGGGAAGCCTTGATGAGGCCCTTCATGAAAGATCTGAGCAATTAGATTGGGACACACGCTTGAATATTATATTGGGAGCAGCAAAAGGGCTTGCTTATTTGCACCATGATTGTTCACCCAGAATCATACATCGGGATATCAAGTCAAGCAACATTTTGCTCGATGGCAATCTGGATGCTCGAGTTTCTGACTTTGGACTTGCCAAGCTTCTGGATGACGATAAATCTCACATTACAACCATTGTTGCTGGAACATTTGGTTATTTGGCCCCCGAATATATGCAAAGTGGTAGGGCAACTGAAAAGACTGATGTATATAGTTTTGGAGTTCTGGTACTTGAAGTACTGAGTGGAAAACGACCTACGGATGCATCATTTATTGAGAAAGGCCTGAACATTGTTGGCTGGTTAAATTTTCTTGTCACGGAGAATAGGCAACGAGAAATAGTTGATCCACAATGTGAAGGAGTACAGTCGGAAACTCTTGACGCATTGCTAAGGCTTGCTATTCAGTGTGTTTCTTCTAGTCCAGATGATCGACCGACTATGCACCGAGTAGTCCAGTTCTTTGAATCCGAGGTTATGACTCCATGCCCAAGTGACTTCGATGATTCCAATTCTGATTAA | 1956 | 42.74 | MILFVFLLSYLATLIRFWTGLDWIVIVIVLFCFFWFEQFRVESGSSSDTSPLTRATMGICLVKCSGLLVLHVLLLCMTMNKSTGLTPDGAALLSFRMAVASSDGVIFQWRPEDPNPCNWTGVVCDPKTKRVISLKLANHKLSGFIAPELGKLDQLKTLTLSDNNLYGTIPSELGNCSQLQGMFLQRNYLSGAIPYELGNLSELEMLDVSSNSLSGNIPTSLGHLDKLAILNVSSNFLIGPVPSDGVLSKFSETSFVGNRGLCGKQVSVICKDDNTGSGTNPEYPSSAQNQMRRKYSGRLLISASATVGALLLVALMCFWGCFLYKRFGKNDKKGLVKDVGGGASVVMFHGDLPYSSKDIMKKLETLNEEHIIGSGGFGTVYRLAMDDGNVFALKNIVKINEGFDHFFERELEILGSLKHRYLVNLRGYCNSPTSKLLIYDYLSGGSLDEALHERSEQLDWDTRLNIILGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLDDDKSHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLVTENRQREIVDPQCEGVQSETLDALLRLAIQCVSSSPDDRPTMHRVVQFFESEVMTPCPSDFDDSNSD | 651 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 25920468 | 25933093 | + | CcPI632755_07g012070.1 | Cco07g1207 | 183860 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g1207 | 651 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 485 | 497 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco07g1207 | 651 | ProSitePatterns | Protein kinases ATP-binding region signature. | 372 | 394 | IPR017441 | GO:0005524(InterPro) | |
Cco07g1207 | 651 | SUPERFAMILY | L domain-like | 86 | 249 | - | - | |
Cco07g1207 | 651 | Gene3D | Transferase(Phosphotransferase) domain 1 | 442 | 640 | - | - | |
Cco07g1207 | 651 | SUPERFAMILY | Protein kinase-like (PK-like) | 350 | 633 | IPR011009 | - | |
Cco07g1207 | 651 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED | 214 | 635 | IPR050647 | - | |
Cco07g1207 | 651 | Pfam | Protein kinase domain | 368 | 631 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco07g1207 | 651 | Gene3D | Ribonuclease Inhibitor | 86 | 272 | IPR032675 | - | |
Cco07g1207 | 651 | Gene3D | Phosphorylase Kinase; domain 1 | 342 | 441 | - | - | |
Cco07g1207 | 651 | SMART | serkin_6 | 366 | 633 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco07g1207 | 651 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 85 | 247 | - | - | |
Cco07g1207 | 651 | Pfam | Leucine rich repeat | 154 | 213 | IPR001611 | GO:0005515(InterPro) | |
Cco07g1207 | 651 | Pfam | Leucine rich repeat N-terminal domain | 87 | 125 | IPR013210 | - | |
Cco07g1207 | 651 | FunFam | LRR receptor-like serine/threonine-protein kinase FEI 1 | 340 | 441 | - | - | |
Cco07g1207 | 651 | ProSiteProfiles | Protein kinase domain profile. | 366 | 638 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco07g1207 | 651 | FunFam | LRR receptor-like serine/threonine-protein kinase IOS1 | 442 | 644 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g1207 | Cco-Chr7:25920468 | Cco11g1674 | Cco-Chr11:29582767 | 6.10E-228 | dispersed | |
Cco07g1207 | Cco-Chr7:25920468 | Cco01g1573 | Cco-Chr1:28443333 | 2.70E-135 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86980 | PF00069 | Pkinase | 3.00E-47 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g1207 | - | - | - | 0.0 |