Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1216 ATGACCGAGCCGGATTCCGATCACCCATCTCCCCCTTTCCCCAAATCAACTCACCGTTCCACTTCCGACGACCGGACCCCACTTATGGATTTCGATCTCGACTTGGACATTCCTTGGCCTTTGGATCAAATCCCTTCTTTCGCTTCCAATCCCATGTCCCCTTTTCTTCTTTCCACCTCCGATCATCTTGCTTCCCCTCTTTGGGCCTTCTCTGAAGCTGATGACGATGACGATTCCAAGTTTGCTGCCTATGCTTGCTCTGTTCTTGGTACTTCCAATTCACATTCCGTACCGCAAAAGCCGACTGAGAACCAAAAGTTTAAGATTCTTCCAGTTCCATCTTCATCATGGGGACTACTGCCATCGGAGAATCCTGATGGGTATTGCTTAATCAAAGAAAAAATGGCACAAGCTCTTCGGTACATTAAAGAATCATCTGACCAGCATGTTCTAGCTCAGGTTTGGGCGCCTGTAAAAAGTGGTGGCAAGTTTGTACTTTCAACTTCTGGGCAACCATTCGTCCTTGATTCGCAGAGCAATGGACTTCATCAGTATCGGATGGCCTCTTTGACGTTTATGTTTTCCTTGGACCCTGACCAGGATGGATATCTTGGGCTCCCTGGTCGTGTTTTCCAACAAAAATTGCCTGAATGGACTCCAAATGTGCAGTATTACTCAAGCAAGGAGTATCCACGACTTAGTCATGCTCTTAACTACAATGTTCAGGGAACTTTGGCTTTGCCTGTTTTCGACCCTTCCGGGCACTCTTGTCTTGGTGTTCTAGAGCTAATCATGACCTCACCGAAGATCAATTATGCACCTGAGGTGGACAAAGTCTGCAAAGCTCTCGAGGCTGTCAATCTAAAAAGTTCAGAAATTTTGGATCATCCGAATAATCAGATACAATCTTGGCAATGCTTTTCAAACCAGATTTGCAATGAAGGTCGTCAGAATGCATTGGCCGAAATTTTGGAGGTACTCACAGTTGTATGCGAAACTCATAACTTACCATTGGCTCAAACCTGGGTTCCATGCAGGCACCGAAACGTGCTCGCCTACGGTGGAGGTTTGAAGAAAAACTGTACTAGCTTTGATGGTAGTTGCATGGGACGGATCTGTATGTCTGCGACTGAAGTAGCATCCTATGTTGTTGATGCTCACATGTGGGGTTTTCGTGACGCATGTTTAGAACACCATTTACAAAAGGGTCAAGGGGTTTCTGGGAGAGCGTTTTTATCCCACAGCTCATGTTTTTGTGGAGACATCACCCAATTCTGTAAGACTGAGTACCCTTTGGTACACTATGCACTTATGTTTGGATTGAAGAGCTGTTTTTCAATCTGCTTACGAAGCACGTTTACTGGAGATGATGAGTACATTCTAGAATTTTTTCTGCCACCGAGCATTGTTGATTATCAGGAACAGAAGACTTTGTTGGGTGCATTAATGGCAACAATGAAGAAGCATTTCTACACTCTCAAAGTTGCATCTGGAATCAACCTTGAGGACAAGGAAGGACTTGTCGAGATCATTCAAGCATCGAGAAATGGAGGATTTGAATCGAGACTTGAATATATTCAAATTCCGCGACCCATGGAATTGCCACCTATATCTGATGCCATACCGAAAGCAGTGGAGGTAGTTGCACTAGAAACATTGCAACAACAATCTTTAATGGTTCATGATGCCCCGAAGGATGAAAACAATAGTGCTCGGGATGGGGAAAGCCACAACCCCATTCCTTGTCCACAGAATAAGGAAGTAAAAAAGACGTCTGAAAGGAAGCGTGGAAAGGCAGAGAAATCAATTAGTCTGGAGGTTCTTCAACAATATTTTGCTGGCAGTCTTAAGGATGCTGCCAAAAGCCTTGGCGTTTGTCCCACAACAATGAAGCGTATCTGTAGGCAACACGGGATCTCACGGTGGCCCTCTCGGAAGATCAACAAGGTCAATCGCTCACTTTCAAAGCTGAAGCGCGTGATTGAATCTGTTCAAGGGGCTGAAGGAGCATTTGGAATATCTTCTCTGGCTACAAGTCCACTTCCTGTTACAGTTAGCTCAAGTTCTCATCCTTTAACTCCCGAAGGGTCTAATCAGCAAAACTTTGTTGCTTCTCAACCATCTGATTCTCAATATAAGGAAACAAACACCTCAGAAGCACAGACAAATGACACACAGGCTAGATTGGAAGATCAATTGCATAGAGTGTTGAGTCCAGAGGAACCAATTCACGAACAGAATGGATATCTGCCAAAGTTTGGAAATGGTTTGAACAATTTTAGAACAGGGAGTGGATCACGGGAAGAGAGTGCCGGGACACCTACTTCTCATGGTTCATGCCAAGGTAGTCCTGCAAACGATAGTGCACTAGCAAATAATCCCATTTCTATTCCTCAGCATGAACAATGTGTAAGAAGAGAATCTCCTGAAGTAGCACTCCATACAATTGATAAACTGAATATATCCGCACCTGCTTGTCCAATCTCGGATGCGATCGTAATGGTTGAGCCTGAGGAACCATTTGGAGGAATGCTGATTGAGGATGCAGGAAGTTCGAAGGACTTGAAAAATCTTTGTGCTTCTGTTGCTGATGCAGTTCTTGACGAGCAAGTACCTGAATTTTGTTGGTCCAACCCTCCTGATATGGCTCTGAGACAACCTATGGACTCTATTTGTCACACAGTTCCTCATATATCACTAAGGCAAGAACCAAGGAGGATGACTATCAAGGCCACTTATAAGGAAGATATTATTCGATTTCGAATTCCTTTGAGTTCTGGTATTGTGGAGTTAAGAGAAGAAGTGGCAAAGAGATTGAAATTGGAGGTTGGTACGTTCGATATCAAATACATGGACGACGATCGTGAATGGGTTCTTATTGCGTGCGATGCAGACCTACAAGAGTGTGTAGATATTTCAAAGTCGTCAGGTAGCAATATAATAAGATTGTTGGTTCATGATTTAAATGTCCATCTTGGGAGTTCTTGTGAGAGTACTGGGGAGTGA 3006 44.05 MTEPDSDHPSPPFPKSTHRSTSDDRTPLMDFDLDLDIPWPLDQIPSFASNPMSPFLLSTSDHLASPLWAFSEADDDDDSKFAAYACSVLGTSNSHSVPQKPTENQKFKILPVPSSSWGLLPSENPDGYCLIKEKMAQALRYIKESSDQHVLAQVWAPVKSGGKFVLSTSGQPFVLDSQSNGLHQYRMASLTFMFSLDPDQDGYLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLSHALNYNVQGTLALPVFDPSGHSCLGVLELIMTSPKINYAPEVDKVCKALEAVNLKSSEILDHPNNQIQSWQCFSNQICNEGRQNALAEILEVLTVVCETHNLPLAQTWVPCRHRNVLAYGGGLKKNCTSFDGSCMGRICMSATEVASYVVDAHMWGFRDACLEHHLQKGQGVSGRAFLSHSSCFCGDITQFCKTEYPLVHYALMFGLKSCFSICLRSTFTGDDEYILEFFLPPSIVDYQEQKTLLGALMATMKKHFYTLKVASGINLEDKEGLVEIIQASRNGGFESRLEYIQIPRPMELPPISDAIPKAVEVVALETLQQQSLMVHDAPKDENNSARDGESHNPIPCPQNKEVKKTSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGISSLATSPLPVTVSSSSHPLTPEGSNQQNFVASQPSDSQYKETNTSEAQTNDTQARLEDQLHRVLSPEEPIHEQNGYLPKFGNGLNNFRTGSGSREESAGTPTSHGSCQGSPANDSALANNPISIPQHEQCVRRESPEVALHTIDKLNISAPACPISDAIVMVEPEEPFGGMLIEDAGSSKDLKNLCASVADAVLDEQVPEFCWSNPPDMALRQPMDSICHTVPHISLRQEPRRMTIKATYKEDIIRFRIPLSSGIVELREEVAKRLKLEVGTFDIKYMDDDREWVLIACDADLQECVDISKSSGSNIIRLLVHDLNVHLGSSCESTGE 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26003702 26007693 - CcPI632755_07g012160.1 Cco07g1216 183869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1216 1001 MobiDBLite consensus disorder prediction 741 793 - -
Cco07g1216 1001 CDD PB1_NLP 907 987 IPR034891 -
Cco07g1216 1001 Pfam NLP protein GAF domain 310 493 IPR055081 -
Cco07g1216 1001 SUPERFAMILY CAD & PB1 domains 900 989 - -
Cco07g1216 1001 MobiDBLite consensus disorder prediction 1 29 - -
Cco07g1216 1001 ProSiteProfiles PB1 domain profile. 906 988 IPR053793 -
Cco07g1216 1001 Pfam RWP-RK domain 602 649 IPR003035 -
Cco07g1216 1001 ProSiteProfiles RWP-RK domain profile. 589 670 IPR003035 -
Cco07g1216 1001 PANTHER PROTEIN NLP8 65 1000 IPR045012 GO:0003700(InterPro)
Cco07g1216 1001 FunFam RWP-RK domain-containing protein 903 987 - -
Cco07g1216 1001 Pfam PB1 domain 907 987 IPR000270 GO:0005515(InterPro)
Cco07g1216 1001 MobiDBLite consensus disorder prediction 683 725 - -
Cco07g1216 1001 MobiDBLite consensus disorder prediction 558 600 - -
Cco07g1216 1001 MobiDBLite consensus disorder prediction 757 793 - -
Cco07g1216 1001 Gene3D - 904 987 - -
Cco07g1216 1001 SMART PB1_new 906 988 IPR000270 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1216 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1216 Cco-Chr7:26003702 Cco07g1246 Cco-Chr7:26353208 1.10E-124 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g190 . . Bda06g00162 . Bpe05g00708 Bpe07g00057 . . Cmo06g00603 Cmo16g00577 . . . . . Cpe14g00447 . . . . . . . . Cla07g01080 Cam07g1420 Cec07g1236 Cco07g1216 Clacu07g1141 Cmu07g1123 Cre07g1500 . . . . . . . Cme07g01523 . . . . . . . . . . . Cma06g00596 Cma16g00528 . . . . . . . . . . . . . . . . . . . . Chy07g01125 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco07g1216 . 186 1001 NLP Transcription Factor Family AT1G64530 51.2 7.3e-216 747.3
Cco07g1216 . 265 1001 NLP Transcription Factor Family AT4G24020 54.1 4.4e-197 684.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59664 PF00564 PB1 3.70E-19 CL0072 Cco TF