Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1226 ATGGCTAATCGGGGAGGAGGGTCATTTTTACCCTCAAATATTCCGCCTCAAGGTTGGGCAGGAGATGAACTTTACGCTGAGCTATGGAGAGTCTCGGCTGGGCCTCTCGTGGAAATTCCTCGAGTTAATGAGAAGGTTCTTTATTTTCCTCAAGGCCACATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTAAATCAGAAACTTCCTTTATTTAATCTTTCCTCCAAAATTCTCTGTCAAGTAGTTGATACCCGGCTGCTGGCAGAGCAGGACAGTGATGAGGTTTATGCACAGATAACTTTAATGCCAGAAGCAAATCAAGAGTTACCTACGAGTCTTGAACCTTCACCCACAGAGTGTCGAAAACCGAAAGTCCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACTAGCACCCATGGGGGGTTCTCCGTGCTCCGGAAACATGCCACCGAATGCCTGCCTCCATTGGATATGACCCAGCAGACTCCAACTCAGGAACTTGTAGCCAAAGATCTTCATGGTTTCGAGTGGCGATTCAAGCATATATTTAGGGGTCAACCACGACGGCATTTGCTGACGACCGGATGGAGCACCTTTGTTACTTCTAAGAGACTAGTTGCTGGAGATTCTTTTGTGTTCTTGAGGGGGGAAAATGGGGAATTGCGAGTTGGAGTGAGGCGTCTTGCTCGCCAACAGAGCAGCATGCCTTCATCTGTGATTTCAAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCATGCGGTGTCAACTCAAACTCGCTTTGTTGTCTATTATAAGCCAAGGGCAAGCCAGTTTATCGTCAGCTTGAATAAGTACATAGAAGCGATGAACTATAAGTTCTCAGTTGGGATGCGGTTCAAGATGAGGTTTGAGGGAGAGGAGTCTCCAGAGAGAAGGTTTTCGGGTACCATAGTTGGAGTTGACGACATGTCTCCTCACTGGACCAATTCAGACTGGCGATCACTGAGAATTCAATGGGATGAACTTGCATCTATTCAGAGACCTGATAGAGTTTCACCATGGGAGATTGAACCTTTTGTGGCTCCTACGTCCCCAAGCATTCCGCACTCTATTTCCATAAAGAATAAAAGGCCTCGGCCTCCACTTGAAATTCTAGATTCTGATAATTCAACTGTAACAACTCTAAGACATCCAGGATCATCTCAATCACATGATGATAGAACACAGCTGAGTGTTGCTGCTGCTGAAATTAAAAGATTTGAAAATCATGCAACATGGCATTACAAGCAAACAGATGTTAGCAGCAATGGGAATTCTGTATCAAGGAGTCCGATGGAGGGCTCTTGGTTAACTTCTCCGAATGGGAGTGTTTCTCAGCATCGGTTACAGGAATTGACAGATGACCGTAAGAGCAGTTCTGTTTGGTCAACGGTCTTTCCAGGAGTGCTGGCATCAAACTCGACATGTCCAACTCCACGCCCATCAAATCCAAAGAGTGACCAAGTACATGACCTTGGGGAAAAGGGGAGGAAAAATGAAGTGGCTCCAAGCTGTCGCTTGTTCGGGATCGAGCTCATCAATCATTCTAAGAGCCCAGTTCCTCCTGAAAGGGTGCCCGATCAACCAATTAGCGCACCAAATGAAATCACTGATGCAGAGCAGAACTCAAACCTGCCAAAGGCTTCTAAAGAAAGAAAATTAGGACTTTTACAAGTACCTCCTAAAGAGATCCAGCACAAGCAGAACAGCTCGACCAGCAGCCGAAGCCGTACTAAGGTACAAATGCAGGGGATGGCCGTCGGACGTGCGGTTGACCTTACCACATTGGAGGGGTATGGCCAACTCATTGATGAACTAGAAAAGATGTTTGATATCAAGGGAGAACTTCGCCCTCGTAATAAGTGGGAGATCGTCTTCACTGACGATGAAGGAGATATGATGCTCATGGGCGACTACCCATGGCAGGAATTCTGTAACATGGTGAGAAGAATATACATATGGTCAAGTCAGGATGTGAAGATGAGTTCGGGTAGCAAACTTGCGATGTCTACAATCGAATGTGACGGGACTGTAATAACCTCGGAGTCAGCCGACAGCTGA 2094 46.32 MANRGGGSFLPSNIPPQGWAGDELYAELWRVSAGPLVEIPRVNEKVLYFPQGHMEQLEASTNQELNQKLPLFNLSSKILCQVVDTRLLAEQDSDEVYAQITLMPEANQELPTSLEPSPTECRKPKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRLARQQSSMPSSVISSHSMHLGVLATASHAVSTQTRFVVYYKPRASQFIVSLNKYIEAMNYKFSVGMRFKMRFEGEESPERRFSGTIVGVDDMSPHWTNSDWRSLRIQWDELASIQRPDRVSPWEIEPFVAPTSPSIPHSISIKNKRPRPPLEILDSDNSTVTTLRHPGSSQSHDDRTQLSVAAAEIKRFENHATWHYKQTDVSSNGNSVSRSPMEGSWLTSPNGSVSQHRLQELTDDRKSSSVWSTVFPGVLASNSTCPTPRPSNPKSDQVHDLGEKGRKNEVAPSCRLFGIELINHSKSPVPPERVPDQPISAPNEITDAEQNSNLPKASKERKLGLLQVPPKEIQHKQNSSTSSRSRTKVQMQGMAVGRAVDLTTLEGYGQLIDELEKMFDIKGELRPRNKWEIVFTDDEGDMMLMGDYPWQEFCNMVRRIYIWSSQDVKMSSGSKLAMSTIECDGTVITSESADS 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26146254 26149877 - CcPI632755_07g012260.1 Cco07g1226 183879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1226 697 SUPERFAMILY CAD & PB1 domains 580 662 - -
Cco07g1226 697 MobiDBLite consensus disorder prediction 482 496 - -
Cco07g1226 697 MobiDBLite consensus disorder prediction 574 590 - -
Cco07g1226 697 MobiDBLite consensus disorder prediction 365 384 - -
Cco07g1226 697 FunFam Auxin response factor 127 231 - -
Cco07g1226 697 Pfam Auxin response factor 255 333 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco07g1226 697 CDD B3_DNA 127 229 IPR003340 GO:0003677(InterPro)
Cco07g1226 697 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 673 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco07g1226 697 MobiDBLite consensus disorder prediction 571 590 - -
Cco07g1226 697 Pfam AUX/IAA family 576 622 IPR033389 -
Cco07g1226 697 Pfam AUX/IAA family 633 669 IPR033389 -
Cco07g1226 697 SMART B3_2 129 231 IPR003340 GO:0003677(InterPro)
Cco07g1226 697 FunFam Auxin response factor 290 361 - -
Cco07g1226 697 Gene3D - 290 361 - -
Cco07g1226 697 ProSiteProfiles PB1 domain profile. 586 667 IPR053793 -
Cco07g1226 697 SUPERFAMILY DNA-binding pseudobarrel domain 114 258 IPR015300 -
Cco07g1226 697 Gene3D - 581 673 - -
Cco07g1226 697 Pfam B3 DNA binding domain 129 229 IPR003340 GO:0003677(InterPro)
Cco07g1226 697 MobiDBLite consensus disorder prediction 527 557 - -
Cco07g1226 697 Gene3D - 126 230 IPR015300 -
Cco07g1226 697 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677(InterPro)
Cco07g1226 697 MobiDBLite consensus disorder prediction 429 457 - -
Cco07g1226 697 MobiDBLite consensus disorder prediction 482 511 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0179 Cco-Chr1:1714161 Cco07g1226 Cco-Chr7:26146254 1.10E-211 dispersed
Cco07g1226 Cco-Chr7:26146254 Cco11g0036 Cco-Chr11:420483 1.10E-174 dispersed
Cco07g1226 Cco-Chr7:26146254 Cco09g0944 Cco-Chr9:8866102 1.40E-209 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59665 PF02362 B3 8.00E-22 CL0405 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1226 K14486 - csv:101213942 1248.42