Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1227 ATGGAGAGTAACCCTCAATCGTTTAGGCAATTCAGCGACCAGCTTCGACTGCAAACTGGGAATCTCGCCAACTTGTCGCTCAACGATTCTATCTGGAGTAATTCGTATGTCTCGAAGAGGCCTGACGAGAGGAGGAATTTCGATGTAAGAAATGGTGGAGAGGTAAATTCGTTGAATAATTTTAAGCCTAAAGTGTCTGATTCTGATGTCAATCGGTTCAATGATGGCTGGAATAGTTTTAAGCCCAGTGTTGCTTCTGATCTTAATAACTGGAGCAACACCACCAGTAGTAGTAACTTGAGTTCAACTAGGTATGAAAAGAATGCACTCAATGTGTTTGATAATGGGTGGAATAGTTTCAAGCCAAAGGGGTCTGATTTTAATGCCTTCAATGATGGATGGAAGCTTAATTCTGCTGATATGGGGGTGGATCCTGTGATTGGAGGAGCTCAAAAGGGTATTAATGGAGGCTTTAACAAAGGGATTCACTCAAAAATTGGGAACTTTAACAGTAACAGTTTTGTAAATCTGAAGAACTACAAGAACACAGGGAAAGTTGAAGAAGAAAATGGAGGGAAGTCTGGGAAGAAGAACAGCAACAAGAAGAACAATGGTGAAAATACCAATGATAATAAGGAAGCTAATAAGAATGCTTTGGACAAGAGGTTCAAGACCCTTCCCCCATCTGAATCTTTGCCCAGAAATGAAACAATTGGTGGATATATCTTTGTCTGCAACAATGATACTATGCAAGAGAATCTCAAGAGGCAGCTTTTTGGTTTGCCTCCAAGATACAGAGATTCCGTCAGGGCCATAACTCCTGGGTTGCCTATTTTCCTTTACAACTATTCTACCCACCAACTCCATGGAATCTTTGAGGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCCTGGGAAGACAAGAAAACTCCTGGCGAATCTCGTTTCCCGGCACAGGTAAGAATTGTGACTAGGAAGATATGCGATCCACTGGAAGAAGACTCTTTCAGACCAATTCTCCACCATTATGATGGCCCCAAGTTCCGCCTTGAACTCAACATTCCAGAGGCACTTTCTCTGCTGGATATATTTGGAGAACAATCCTCTTGA 1116 42.11 MESNPQSFRQFSDQLRLQTGNLANLSLNDSIWSNSYVSKRPDERRNFDVRNGGEVNSLNNFKPKVSDSDVNRFNDGWNSFKPSVASDLNNWSNTTSSSNLSSTRYEKNALNVFDNGWNSFKPKGSDFNAFNDGWKLNSADMGVDPVIGGAQKGINGGFNKGIHSKIGNFNSNSFVNLKNYKNTGKVEEENGGKSGKKNSNKKNNGENTNDNKEANKNALDKRFKTLPPSESLPRNETIGGYIFVCNNDTMQENLKRQLFGLPPRYRDSVRAITPGLPIFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKTPGESRFPAQVRIVTRKICDPLEEDSFRPILHHYDGPKFRLELNIPEALSLLDIFGEQSS 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26182393 26183951 + CcPI632755_07g012270.1 Cco07g1227 183880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1227 371 ProSiteProfiles DCD domain profile. 236 368 IPR013989 -
Cco07g1227 371 Pfam Development and cell death domain 239 366 IPR013989 -
Cco07g1227 371 PANTHER - 193 369 IPR044832 GO:0034976(InterPro)
Cco07g1227 371 MobiDBLite consensus disorder prediction 206 220 - -
Cco07g1227 371 SMART dcd 236 368 IPR013989 -
Cco07g1227 371 MobiDBLite consensus disorder prediction 185 231 - -
Cco07g1227 371 Coils Coil 202 222 - -
Cco07g1227 371 MobiDBLite consensus disorder prediction 185 200 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1227 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0178 Cco-Chr1:1685914 Cco07g1227 Cco-Chr7:26182393 1.50E-97 dispersed
Cco05g1545 Cco-Chr5:19451702 Cco07g1227 Cco-Chr7:26182393 2.00E-74 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g160 . . . . . . Bma07g01687 . . Cmo16g00586 . . . . . Cpe14g00450 . . . . . . . . Cla07g01087 Cam07g1411 Cec07g1250 Cco07g1227 Clacu07g1152 Cmu07g1131 Cre07g1511 . . . . . . . Cme07g01537 . Blo19g00370 . Bda09g00012 Bpe08g01522 . . . . . . . Cma16g00534 . . . . . . . . . . . . . . . . . . . Csa04g00676 Chy07g01134 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007398 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 36