Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1240 ATGAGTTCCAAGATCTGCAGATCTGCCTCCAGAGCCGCCAGGTCCATCCTCAATGCTTCCCGGAGCTCTCGCGCTTATACCACTGGAGGCAGAGCCGTGGCTTCTGCAGCAGCAGTATCGCTAAGAGAAAAGTTGCCTTCTCTTGCTTCAATCTATGAGAATGCTGGTTCTGGATACTCATCTAGAGGATGGATTTCAGGACTGCTTGCCCTTCCTGCTGGAGCTTTCATGCTCCAGGAGCAGGAAGCACATGCTGCAGAGTTTGAGCGCACGTTTATAGCCATCAAGCCAGATGGTGTACAGAGAGGGCTGATCTCAGAAATCATATCCCGTTTCGAGAGGAAAGGGTTTAAACTTGTAGGCATCAAAGTTATTGTCCCTTCAAAGGAATTTGCTGAGAAGCATTATCACGATCTGAAGGAAAGACCCTTCTTTAATGGCCTCTGTGAATTTCTTAGCTCCGGCCCCGTCATTGCAATGGTTTGGGAAGGCGAGGGAGTGATCAGATATGGACGAAAACTTATTGGAGCAACAGATCCACAGAAATCTGAGCCCGGTACCATTCGAGGAGATCTAGCTGTTGTAGTTGGCAGGAACATCATCCATGGAAGCGATGGACCAGAGACAGCCAAAGATGAGATCAAGTTGTGGTTCAAGCCAGAGGAATTGGATCTCCCAAAGTGTTCTGCCCTAATTCTTCACCGGTGTTTCTCCGGTCGATTTTCTAGCGGCGAATTATCTTCTCGTCAAGAGATGGCGGCTAAACCACTTACTACCGAGGCAATTGCCATAACTGAGAAGAAGATGGACATGGCTTTAGACGACATTATTAAAATGTCCAAAAATACGGGGAATAAAGGCAGGAAGCAAAGAAGGTTACCGAACAAATTGCAGAAATTTCCAAATAATGCTACCCAAGATAGACCTAGGAAGTTGCAACGTTTCATGGACTCTAGATCTTCTCTGAGACAGGGGGCTTTGGCCAATAGAAGGTCAAACTTTCAAGGGAATCAGTTTGCTTTGGCAACTGAGGTTGCAAGAAAGGCTGCAGTTGCTCCAATTCGCCCTAGACCTTTTAATCGTAGGGCACCCAATTGGAATAAAACAAGAAGGTGGGGCAAAGATAGTTTGAAAATTTTGAATGAATTTGCGTCTTCTTGTTCATCATGCTCAAACTCTGCTGTTGTTAACTCCCATTCCTGGTGGATGACAATCGACATATCTTCATTGGCTTATAATAACGCAGGCAAAGAACCTTTGGGTCTCTGGCATCTTCAGTTTAGTCAGTGGAATACGCTAGTACTGCAGAAGTCCATGCTGCTTGATTTTCTGGTTGAAGCCTTCATTTTCTGGGTTGATGCTCCACCGGCTCCGAGGAAGCCTTTCACCAATGGAACCTTCGTTCCCAAGGTATCTGCACCGGCCCAGCTGCAAACAAATGCCACACCAAGACAGAGGCCACAAACTCTTGACTCACTGTTTGCCAACATGAAGGAACAGAGGTTAAGGGTGTTATCGCAGCGGCAAAATGGTGGTGGGGTACAACAACAGCAACAACGGCATGGTGGTCGACAACAAAGACCTCCATGGGGGAAGAGGCCGTTTTGGTAG 1611 46.99 MSSKICRSASRAARSILNASRSSRAYTTGGRAVASAAAVSLREKLPSLASIYENAGSGYSSRGWISGLLALPAGAFMLQEQEAHAAEFERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVIVPSKEFAEKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELDLPKCSALILHRCFSGRFSSGELSSRQEMAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKLQKFPNNATQDRPRKLQRFMDSRSSLRQGALANRRSNFQGNQFALATEVARKAAVAPIRPRPFNRRAPNWNKTRRWGKDSLKILNEFASSCSSCSNSAVVNSHSWWMTIDISSLAYNNAGKEPLGLWHLQFSQWNTLVLQKSMLLDFLVEAFIFWVDAPPAPRKPFTNGTFVPKVSAPAQLQTNATPRQRPQTLDSLFANMKEQRLRVLSQRQNGGGVQQQQQRHGGRQQRPPWGKRPFW 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26263667 26274339 - CcPI632755_07g012400.1 Cco07g1240 183893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1240 536 CDD NDPk_I 89 218 - -
Cco07g1240 536 SMART ndk_5 88 225 IPR034907 -
Cco07g1240 536 MobiDBLite consensus disorder prediction 281 308 - -
Cco07g1240 536 FunFam Nucleoside diphosphate kinase 84 229 - -
Cco07g1240 536 ProSitePatterns Nucleoside diphosphate kinases active site. 199 207 IPR023005 -
Cco07g1240 536 PANTHER RIBOSOME MATURATION FACTOR 252 532 - -
Cco07g1240 536 PRINTS Nucleoside diphosphate kinase signature 155 172 IPR001564 GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro)
Cco07g1240 536 PRINTS Nucleoside diphosphate kinase signature 199 218 IPR001564 GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro)
Cco07g1240 536 PRINTS Nucleoside diphosphate kinase signature 135 154 IPR001564 GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro)
Cco07g1240 536 PRINTS Nucleoside diphosphate kinase signature 176 192 IPR001564 GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro)
Cco07g1240 536 PRINTS Nucleoside diphosphate kinase signature 91 113 IPR001564 GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro)
Cco07g1240 536 SUPERFAMILY Nucleoside diphosphate kinase, NDK 88 223 IPR036850 -
Cco07g1240 536 Pfam Nucleoside diphosphate kinase 89 222 IPR034907 -
Cco07g1240 536 Hamap Nucleoside diphosphate kinase [ndk]. 88 223 IPR001564 GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro)
Cco07g1240 536 MobiDBLite consensus disorder prediction 505 524 - -
Cco07g1240 536 Gene3D - 77 223 IPR036850 -
Cco07g1240 536 MobiDBLite consensus disorder prediction 505 536 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1240 K00940 - - csv:101210301 402.905
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0011 Cco-Chr5:119245 Cco07g1240 Cco-Chr7:26263667 5.20E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g140 . . . . . . . . . . . . . . . . . . . . . . . . Cla07g01098 Cam07g1400 Cec07g1260 Cco07g1240 Clacu07g1161 Cmu07g1141 Cre07g1521 . . Cone6ag0854 Cone9ag0856 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00662 Chy07g01149 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002103 2 2 3 3 3 2 2 2 1 2 2 1 2 2 2 2 2 4 2 1 2 2 3 2 2 2 2 3 2 2 64