Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1268 ATGGCCCAAAAGGTTTGTGCTCACCAAAATGGTTCAATGGAGAGCTTGTGCAGCACCCATCAGGATCCACTCAACTGGGGTGTGGCCGCTGACTCCATGAAGGGAAGTCATCTGGATGAGGTCAAGCGGATGGTGGAAGAGTATCGGACACCTTTGGTGAAGCTTGGAGGACAAACTCTCACCATTTCTCAAGTCGCTGCCATTGCCACTCGTGACAACGATGTCATCGTAGAATTGGCCGAGTCTGCGAGGGCCGGTGTAAAAGCCAGCAGCGATTGGGTGATGGAGAGCATGAGCAAAGGCACGGATAGTTATGGTGTTACTACTGGCTTTGGTGCCACTTCCCATAGAAGAACCAATCAAGGTGGAGCTCTTCAAAAGGAGTTGATCCGATTCTTGAATTCCGGTATCTTTGGGACTGGCAGTGAGTCGAGTCACACTTTGCCTCATTCTGCCACAAGGGCGGCCATGTTGGTGAGAATCAACACACTCCTACAAGGCTACTCCGGCATTAGATTCGAGATTTTGGAAGCCATTGCTAATCTCTTGAACCACAACGTTACTCCGTGTTTGCCACTTCGAGGAACAATTACAGCTTCTGGAGATTTGGTTCCTTTGTCTTATATTGCAGGGCTGCTCACCGGTCGCCACAATTCAAAAGCGATTGGACCCAATGGAGAACCTCTTGATGCAAAGGCTGCTTTTGAACAAGCTGGCATTGATTCTGGGTTCTTTGAGTTGCAACCTAAGGAAGGTCTTGCTCTTGTAAATGGAACCGCTGTCGGTTCTGGGTTGGCCTCCATTGTTCTCTTCGAGGCAAATATTTTGGCTGTTTTGTCTGAAATTCTATCTGCCATTTTTGCTGAGGTGATGCAAGGAAAGCCTGAATTCACCGACCATTTGACCCATAAGTTGAAGCACCACCCTGGCCAAATTGAAGCTGCTGCAATCATGGAGCACATTTTAGATGGAAGCTCCTACATGAAAACTGCTAAGAAACTGCATGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGTTGGGTCCCTTGATTGAAGTGATCCGTTTCTCCACCAAGTCGATCGAGCGGGAAATTAATTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCGTTGCATGGAGGTAACTTCCAAGGAACGCCAATTGGAGTTTCCATGGACAACACCCGTTTGGCCATTGCATCGATTGGAAAGCTTATGTTTGCCCAATTTTCAGAACTCGTCAATGATTTCTACAATAACGGTTTGCCTTCCAATCTTTCTGCAAGTAGAAACCCCAGCTTGGATTATGGCTTCAAAGGTGCTGAGATTGCCATGGCCTCATACTGCTCTGAGCTCCAATATCTTGCAAATCCAGTGACGAGTCATGTCCAGAGCGCCGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAAACCGCTGAAGCCATCGATATCCTTAAACTCATGTCTTCCACATTTTTAGTTGCTCTTTGTCAAGCAATTGACTTGAGGCATTTGGAGGAAAACTTGAAGAGCACGGTGAAAAACACAGTTAGCCAAGTAGCGAAAAAGGTGTTGACTACATCCTCCAATGGCGCACTTCACCCATCAAGATTTTGTGAGAAAGATCTACTCAAAGTTGTTGACCGAGAATACACTTTTGCATACATCGATGATCCATGCAGTGCTACTTACCCACTTATGCAAAAGTTGAGGCAAGTTCTTGTTGAGCATGCACTTGAAAATGGCGATAACGAAGTCAACGCAAACACTTCAATCTTCCAAAAGATTGGTGCTTTCGAAGAGGAATTAAAGGCAATCTTACCGAAGGAGGTTGAAAATGTAAGGATTGCATATGAGAGTGGGAACTCTAAAATTGAAAATCAAATCAAGGATTGCAGATCTTACCCATTATACAGATTTGTGAGAGAGGAGTTGGGAACAAGCTTGCTAACTGGCGAAAAGGTGATATCTCCTGGAGAAGAGTGTGAGAAGGTATTCACGGCTTTATGTCAAGGAAAAATGATCGACTCTATCTTCGAATGCTTGAAGGAGTGGAATGGAGCACCAATCCCTACTTGCTAA 2142 45.1 MAQKVCAHQNGSMESLCSTHQDPLNWGVAADSMKGSHLDEVKRMVEEYRTPLVKLGGQTLTISQVAAIATRDNDVIVELAESARAGVKASSDWVMESMSKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNSGIFGTGSESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGEPLDAKAAFEQAGIDSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALENGDNEVNANTSIFQKIGAFEEELKAILPKEVENVRIAYESGNSKIENQIKDCRSYPLYRFVREELGTSLLTGEKVISPGEECEKVFTALCQGKMIDSIFECLKEWNGAPIPTC 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26689437 26691578 - CcPI632755_07g012680.1 Cco07g1268 183921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1268 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Cco07g1268 713 Gene3D - 14 259 IPR024083 -
Cco07g1268 713 CDD PAL-HAL 58 523 IPR001106 -
Cco07g1268 713 PANTHER HISTIDINE AMMONIA-LYASE 16 713 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cco07g1268 713 FunFam Phenylalanine ammonia-lyase 526 647 - -
Cco07g1268 713 NCBIfam phenylalanine ammonia-lyase 22 703 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cco07g1268 713 FunFam Phenylalanine ammonia-lyase 13 259 - -
Cco07g1268 713 Pfam Aromatic amino acid lyase 60 538 IPR001106 -
Cco07g1268 713 Gene3D - 526 647 IPR023144 -
Cco07g1268 713 SUPERFAMILY L-aspartase-like 22 713 IPR008948 GO:0003824(InterPro)
Cco07g1268 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841(InterPro)
Cco07g1268 713 FunFam Phenylalanine ammonia-lyase 260 564 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1112 Cco-Chr4:26562349 Cco07g1268 Cco-Chr7:26689437 0.00E+00 dispersed
Cco04g1113 Cco-Chr4:26567141 Cco07g1268 Cco-Chr7:26689437 0.00E+00 dispersed
Cco04g1114 Cco-Chr4:26572138 Cco07g1268 Cco-Chr7:26689437 0.00E+00 dispersed
Cco04g1115 Cco-Chr4:26576554 Cco07g1268 Cco-Chr7:26689437 0.00E+00 dispersed
Cco04g1116 Cco-Chr4:26581476 Cco07g1268 Cco-Chr7:26689437 2.90E-168 dispersed
Cco04g1117 Cco-Chr4:26582599 Cco07g1268 Cco-Chr7:26689437 7.60E-114 dispersed
Cco07g1268 Cco-Chr7:26689437 Cco08g0900 Cco-Chr8:20905066 0.00E+00 dispersed
Cco07g1268 Cco-Chr7:26689437 Cco07g1269 Cco-Chr7:26695347 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1268 K10775 - csv:101204574 1357.04