Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1289 ATGGACACAGAGGAAACTCCATCGACACCGGTGACGCCGGGGACTCCCGGGGCTCCGCTGTTTGGACGAGTGAAGGATAATCAGCATGGAAGTGAGAATGGTAAAAGATCTCTTCTCAAGAGCTGCATCTCTTTCAATGTTGATGATAATTGGGGCAGTGAAGAAGGAGGCTTATCTAAACTAGTCTCTTCTTGTTCATTGCCATACCCTCCTGTCTCACTTGCAAGAAAGGTGGGAGCGGAGTTCATAGGTACTTCGATACTTATCTTTGCCGGAACCGCCACGGCCATCGTGAACCAAAAGACAAAAGGAACCGAAACACTGATTGGGCTGGCGGCCTCCACTGGCCTTGCGGTGATGATTGTGATCTTGTCGATGGGTCACATCTCTGGAGCCCATCTGAATCCGGCCATCACCATTGCTTTTGCTGCGTTGAAGCAGTTTCCATGGAAGCATGTGCCAGTGTATATTGGAGCTCAAATGGTGGCTTCTTTGTGTTCTTCGTTTGCATTGAAATGGATCTTTGATCCCATAATGGGAGGAGGAGCCACTGTTCCTTCATGTGGAAATGCCCAAGCTTTTGCTCTTGAATTTATCATTAGCTTCAACCTCATGTTCGTCATCACTGCTGTCGCTACTGACACTCGGGCTGTGGGAGAATTGGCGGGAATCACGGTAGGAGCAACCGTTATGCTCAATGTACTCATCGCCGGACAAACAACTGGAGCTTCAATGAATCCAGTAAGAACACTGGGGCCAGCAATTGCTGCAAACAACTTTAGAGCCATTTGGATTTACCTCACAGCTCCCATACTAGGGACATTGTGTGGAGCTGGAATCTACACTGCAGTTAAGTTGCCCGACAAAGATGGCGATTCACGTTTGCCTTCTACTGCAGGAAGCTTTCGAGGATGA 915 48.63 MDTEETPSTPVTPGTPGAPLFGRVKDNQHGSENGKRSLLKSCISFNVDDNWGSEEGGLSKLVSSCSLPYPPVSLARKVGAEFIGTSILIFAGTATAIVNQKTKGTETLIGLAASTGLAVMIVILSMGHISGAHLNPAITIAFAALKQFPWKHVPVYIGAQMVASLCSSFALKWIFDPIMGGGATVPSCGNAQAFALEFIISFNLMFVITAVATDTRAVGELAGITVGATVMLNVLIAGQTTGASMNPVRTLGPAIAANNFRAIWIYLTAPILGTLCGAGIYTAVKLPDKDGDSRLPSTAGSFRG 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26976932 26981142 + CcPI632755_07g012890.1 Cco07g1289 183942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1289 304 MobiDBLite consensus disorder prediction 1 33 - -
Cco07g1289 304 ProSitePatterns MIP family signature. 133 141 IPR022357 -
Cco07g1289 304 FunFam Aquaporin NIP2-1 65 295 - -
Cco07g1289 304 Gene3D Glycerol uptake facilitator protein. 69 293 IPR023271 -
Cco07g1289 304 Pfam Major intrinsic protein 73 281 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco07g1289 304 PRINTS Major intrinsic protein family signature 196 214 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco07g1289 304 PRINTS Major intrinsic protein family signature 227 249 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco07g1289 304 PRINTS Major intrinsic protein family signature 264 284 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco07g1289 304 PRINTS Major intrinsic protein family signature 76 95 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco07g1289 304 PRINTS Major intrinsic protein family signature 115 139 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco07g1289 304 PRINTS Major intrinsic protein family signature 152 171 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco07g1289 304 SUPERFAMILY Aquaporin-like 72 289 IPR023271 -
Cco07g1289 304 PANTHER AQUAPORIN NIP2-1 68 289 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0116 Cco-Chr1:955715 Cco07g1289 Cco-Chr7:26976932 4.30E-88 dispersed
Cco01g0117 Cco-Chr1:963760 Cco07g1289 Cco-Chr7:26976932 4.80E-80 dispersed
Cco07g1289 Cco-Chr7:26976932 Cco10g1499 Cco-Chr10:28147248 1.90E-54 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1289 K09874 - csv:101207376 564.688