Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g1289 | ATGGACACAGAGGAAACTCCATCGACACCGGTGACGCCGGGGACTCCCGGGGCTCCGCTGTTTGGACGAGTGAAGGATAATCAGCATGGAAGTGAGAATGGTAAAAGATCTCTTCTCAAGAGCTGCATCTCTTTCAATGTTGATGATAATTGGGGCAGTGAAGAAGGAGGCTTATCTAAACTAGTCTCTTCTTGTTCATTGCCATACCCTCCTGTCTCACTTGCAAGAAAGGTGGGAGCGGAGTTCATAGGTACTTCGATACTTATCTTTGCCGGAACCGCCACGGCCATCGTGAACCAAAAGACAAAAGGAACCGAAACACTGATTGGGCTGGCGGCCTCCACTGGCCTTGCGGTGATGATTGTGATCTTGTCGATGGGTCACATCTCTGGAGCCCATCTGAATCCGGCCATCACCATTGCTTTTGCTGCGTTGAAGCAGTTTCCATGGAAGCATGTGCCAGTGTATATTGGAGCTCAAATGGTGGCTTCTTTGTGTTCTTCGTTTGCATTGAAATGGATCTTTGATCCCATAATGGGAGGAGGAGCCACTGTTCCTTCATGTGGAAATGCCCAAGCTTTTGCTCTTGAATTTATCATTAGCTTCAACCTCATGTTCGTCATCACTGCTGTCGCTACTGACACTCGGGCTGTGGGAGAATTGGCGGGAATCACGGTAGGAGCAACCGTTATGCTCAATGTACTCATCGCCGGACAAACAACTGGAGCTTCAATGAATCCAGTAAGAACACTGGGGCCAGCAATTGCTGCAAACAACTTTAGAGCCATTTGGATTTACCTCACAGCTCCCATACTAGGGACATTGTGTGGAGCTGGAATCTACACTGCAGTTAAGTTGCCCGACAAAGATGGCGATTCACGTTTGCCTTCTACTGCAGGAAGCTTTCGAGGATGA | 915 | 48.63 | MDTEETPSTPVTPGTPGAPLFGRVKDNQHGSENGKRSLLKSCISFNVDDNWGSEEGGLSKLVSSCSLPYPPVSLARKVGAEFIGTSILIFAGTATAIVNQKTKGTETLIGLAASTGLAVMIVILSMGHISGAHLNPAITIAFAALKQFPWKHVPVYIGAQMVASLCSSFALKWIFDPIMGGGATVPSCGNAQAFALEFIISFNLMFVITAVATDTRAVGELAGITVGATVMLNVLIAGQTTGASMNPVRTLGPAIAANNFRAIWIYLTAPILGTLCGAGIYTAVKLPDKDGDSRLPSTAGSFRG | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 26976932 | 26981142 | + | CcPI632755_07g012890.1 | Cco07g1289 | 183942 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g1289 | 304 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Cco07g1289 | 304 | ProSitePatterns | MIP family signature. | 133 | 141 | IPR022357 | - | |
Cco07g1289 | 304 | FunFam | Aquaporin NIP2-1 | 65 | 295 | - | - | |
Cco07g1289 | 304 | Gene3D | Glycerol uptake facilitator protein. | 69 | 293 | IPR023271 | - | |
Cco07g1289 | 304 | Pfam | Major intrinsic protein | 73 | 281 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco07g1289 | 304 | PRINTS | Major intrinsic protein family signature | 196 | 214 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco07g1289 | 304 | PRINTS | Major intrinsic protein family signature | 227 | 249 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco07g1289 | 304 | PRINTS | Major intrinsic protein family signature | 264 | 284 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco07g1289 | 304 | PRINTS | Major intrinsic protein family signature | 76 | 95 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco07g1289 | 304 | PRINTS | Major intrinsic protein family signature | 115 | 139 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco07g1289 | 304 | PRINTS | Major intrinsic protein family signature | 152 | 171 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco07g1289 | 304 | SUPERFAMILY | Aquaporin-like | 72 | 289 | IPR023271 | - | |
Cco07g1289 | 304 | PANTHER | AQUAPORIN NIP2-1 | 68 | 289 | IPR034294 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0116 | Cco-Chr1:955715 | Cco07g1289 | Cco-Chr7:26976932 | 4.30E-88 | dispersed | |
Cco01g0117 | Cco-Chr1:963760 | Cco07g1289 | Cco-Chr7:26976932 | 4.80E-80 | dispersed | |
Cco07g1289 | Cco-Chr7:26976932 | Cco10g1499 | Cco-Chr10:28147248 | 1.90E-54 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g1289 | K09874 | - | csv:101207376 | 564.688 |