Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1292 ATGCATTTTCCAATACCAGAACCATCCCCTTCTGAAACTTCAACAATCATCTCTGCTTCAGAGTCTTCTCCACCATGTCCAAAGGGGGATCGAATAACAGACCAAATTAACCCTAATTCTCAACTGGGTTTGGATCTGAGCCTTTCTAATAAAGATTCCGATCATGGGTCGAACCCAGAACTCAATCTAATCGACTGTTTCGATGTGAATTTAACAACAGAACCTACAGATACAGAAACGGAGCCCAGGGTTTTCTCTTGCAACTATTGCCAGAGGAAATTTTACAGTTCTCAAGCTCTTGGGGGACACCAAAATGCCCACAAGCGAGAGAGGACTTTAGCAAAGAGGACTCAACGGATCGGGTCGGCCTCTAATTTCGGGCTTGCTCATCGGTATTCGAGTTTGGCTTCTCTTCCTCTTCATGGGTCGTTCAGTAGGTCACTTGGAATTCAAGTTCATTCCATGGTTCATAAGCCTTCTTCTCTTCATGTTTCTGCAATTGGGTCATCTGGAATTTATGGCCACAGTGGATGGTCAAGGCAGCCGCTCGATCAACACCCGGCGATTGGCCGGTTGATGCAGGGAAATTCCCACGTTGGAAGTCTTAGAGGCATTTCGTCGAACACTGGAGCTGCAAGGTTTCAGGGTGTGAAGAAATTCTCTCCAGCGGCAGACACGGAGGCGCCACCGCCGCTCGGAGGGTTCTGGTGGGATGGCGGCGGTGGTGATGGTTTTAGTCATCTGAAGACGAAGCCTAAACAAGATGAGTTGTTGAAGCTTGACTTGTCTCTTAAGCTCTAA 801 47.69 MHFPIPEPSPSETSTIISASESSPPCPKGDRITDQINPNSQLGLDLSLSNKDSDHGSNPELNLIDCFDVNLTTEPTDTETEPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRTQRIGSASNFGLAHRYSSLASLPLHGSFSRSLGIQVHSMVHKPSSLHVSAIGSSGIYGHSGWSRQPLDQHPAIGRLMQGNSHVGSLRGISSNTGAARFQGVKKFSPAADTEAPPPLGGFWWDGGGGDGFSHLKTKPKQDELLKLDLSLKL 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27011732 27012532 + CcPI632755_07g012920.1 Cco07g1292 183945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1292 266 MobiDBLite consensus disorder prediction 1 37 - -
Cco07g1292 266 SUPERFAMILY beta-beta-alpha zinc fingers 81 112 IPR036236 -
Cco07g1292 266 Gene3D Classic Zinc Finger 66 129 - -
Cco07g1292 266 MobiDBLite consensus disorder prediction 8 22 - -
Cco07g1292 266 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Cco07g1292 266 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 266 IPR044246 GO:0009788(InterPro)
Cco07g1292 266 FunFam Zinc finger protein 2 67 131 - -
Cco07g1292 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1204 Cco-Chr5:11209286 Cco07g1292 Cco-Chr7:27011732 9.10E-21 dispersed
Cco05g1879 Cco-Chr5:27836825 Cco07g1292 Cco-Chr7:27011732 5.70E-23 dispersed
Cco07g1292 Cco-Chr7:27011732 Cco11g0126 Cco-Chr11:1349834 3.60E-25 dispersed
Cco01g0705 Cco-Chr1:7401631 Cco07g1292 Cco-Chr7:27011732 7.40E-24 transposed
Cco05g1218 Cco-Chr5:11441523 Cco07g1292 Cco-Chr7:27011732 1.80E-24 transposed
Cco06g1520 Cco-Chr6:25699393 Cco07g1292 Cco-Chr7:27011732 2.90E-13 transposed
Cco07g0168 Cco-Chr7:1813104 Cco07g1292 Cco-Chr7:27011732 4.20E-11 transposed
Cco10g1621 Cco-Chr10:29578600 Cco07g1292 Cco-Chr7:27011732 9.80E-15 transposed
Cco11g1351 Cco-Chr11:26334197 Cco07g1292 Cco-Chr7:27011732 1.90E-17 transposed
Cco07g1292 Cco-Chr7:27011732 Cco08g1535 Cco-Chr8:27012731 4.30E-31 wgd
Cco07g1292 Cco-Chr7:27011732 Cco09g0313 Cco-Chr9:2733585 2.20E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59671 None None None None Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1292 - - - 0.0