Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1312 ATGCCGAAGCTGGTTTTGAAAGGGGGGAGTAGGCCACCATGGGTTGGCTTAGCTGCTGCTGTTTGGGTTCAAATAGCTGGTGGTTCTTCTTATAACTTTTCTCTTTATTCACACTTGCTTAAATCTGTTCTGGGCTTGAATCAGCAGCAGCTTACTGTGTTGGGAGTGGCTAATGACATTGGAGAGAGTATGGGTTTGGTTCCTGGCCTTGCCTGTAACAGATTTCCTCCATGGGTTATACTTTTGTTTGGTGCTTTCTGTTGCTTTCTGGGTTATGGGGCTATTTGGCTTGCTGTTAGCAGGACTGTCCCCAATCTGCCTTATTGGCTGCTATGGATCACACATTGTATTGCTACGAATAGCAATGCATGGTTTGGAACAGCTGTGCTCGTAACCAACATGAGGAATTTCCCTCTTAGCAGAGGTACTGTTGCTGGCATTCTTAAAGGTTATGTCGGGCTTAGTGCTGCTGTATACACAGTGATATACAGTATGGTACTGAAAAAGTCTGCTTTGAATTTACTGTTGTTTCTTGCGATCGGGATACCCATTTTGTGCTTAGCCTTGATGTACTTTGTTCGACCTTGTACTCCGGCTTCTTCAGAGGATCCATCTGAGCGTGCTCATTTTCTTTTCACACAAGCTGCTTGTGTTTTGCTAGCTGTTTTTTTAGTCTCGACCACAATTCTAGATGCAACAACAACCCCTAGTGATGCCGTTGGATACACCTTAGTTGCCATAATGGTTATCCTTTTAATGTCTCCTCTTGCAGTTCCCATAAAAATGACCATTTGTGCAAAATCCAAAAAACTTGGCCCTCGAGTTGATTCTGCAGAACCTTTGGCTTCTGGAGAAAGCGATTCTTCCCAAATTGAACCTTTATTGACACCATCTTCCTCAGCTACAAATCTTGGAAGTTTCTGCGAGAATGATGATTCATCAGATGTAGAAACACTTCTTGCTGTGGGAGAGGGAGCGATTCATAAGAAGAAGAGACGACCTAAAAGAGGGGAAGATTTCAAGCTCCGTGAAGCCGTAATCAAAGCTGATTTCTGGCTGCTTTGGTTCTTGTACTTCCTCGGGGTCGGTCCAGGAATAACAATTCTCAACAATTTGTCTCAAATTGGGATTTCATTAGGTGTTAATGACACAACATTGCTGTTGGCTCTTTTCAGCTTTTGCAATTTTGTCGGTCGTCTAGGCTCTGGTGTTATTTCCGAACACTTCGTCAGGTCAAGAATGATACCTCGCTCACTGTGGATGATGTTTGCACTAATACTCATGGCTATAGCATTCCTCCTGTATGCATCTGCTCTCATGGGTACTCTCTACGTCGCCACTGGTTTAACTGGAATCAGCTACGGAGTTCTGTACTCTATGATGGTCCCTCTCGCATCTGAGATTTTCGGTCTAAAGAATTTCGGAGTAATCTTCAACTTCATGCAGCTGGGGAATCCAATAGGAGCAGTCCTTTTCTCAGTTCTACTCGCCAGTACTCTATACGACAACGAAGCTGCTAAGCAAGGTTCAATAACCTGCATAGGCCAACAGTGCTTCAGGACGACTTTCTTCATCCTTTCGGGCGTTGCTGGGTTAGGTTCGATCGTGAGCATGATTCTGACTGTTAGATTAAGGCCAGTCTATCAAATGCTATATTCCGGTGGCTCGTTCCGCTTGCCTCAAAGTTCAGGTCATTGA 1698 44.35 MPKLVLKGGSRPPWVGLAAAVWVQIAGGSSYNFSLYSHLLKSVLGLNQQQLTVLGVANDIGESMGLVPGLACNRFPPWVILLFGAFCCFLGYGAIWLAVSRTVPNLPYWLLWITHCIATNSNAWFGTAVLVTNMRNFPLSRGTVAGILKGYVGLSAAVYTVIYSMVLKKSALNLLLFLAIGIPILCLALMYFVRPCTPASSEDPSERAHFLFTQAACVLLAVFLVSTTILDATTTPSDAVGYTLVAIMVILLMSPLAVPIKMTICAKSKKLGPRVDSAEPLASGESDSSQIEPLLTPSSSATNLGSFCENDDSSDVETLLAVGEGAIHKKKRRPKRGEDFKLREAVIKADFWLLWFLYFLGVGPGITILNNLSQIGISLGVNDTTLLLALFSFCNFVGRLGSGVISEHFVRSRMIPRSLWMMFALILMAIAFLLYASALMGTLYVATGLTGISYGVLYSMMVPLASEIFGLKNFGVIFNFMQLGNPIGAVLFSVLLASTLYDNEAAKQGSITCIGQQCFRTTFFILSGVAGLGSIVSMILTVRLRPVYQMLYSGGSFRLPQSSGH 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27216412 27220145 - CcPI632755_07g013120.1 Cco07g1312 183965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1312 565 MobiDBLite consensus disorder prediction 282 298 - -
Cco07g1312 565 Gene3D MFS general substrate transporter like domains 346 548 IPR036259 -
Cco07g1312 565 SUPERFAMILY MFS general substrate transporter 332 546 IPR036259 -
Cco07g1312 565 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 13 548 - GO:0016020(PANTHER)
Cco07g1312 565 MobiDBLite consensus disorder prediction 274 298 - -
Cco07g1312 565 SUPERFAMILY MFS general substrate transporter 11 199 IPR036259 -
Cco07g1312 565 CDD MFS_Mch1p_like 12 533 - -
Cco07g1312 565 Gene3D MFS general substrate transporter like domains 7 275 IPR036259 -
Cco07g1312 565 Pfam Nodulin-like 13 260 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0460 Cco-Chr2:4166174 Cco07g1312 Cco-Chr7:27216412 5.90E-93 dispersed
Cco07g1312 Cco-Chr7:27216412 Cco11g0731 Cco-Chr11:8081080 3.20E-92 dispersed
Cco07g1312 Cco-Chr7:27216412 Cco02g1280 Cco-Chr2:24409518 3.20E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1312 - - - 0.0