Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1322 ATGGCAAGACCTCAACAACGCTATCGAGGAGTTCGTCAAAGGCATTGGGGCTCTTGGGTCTCTGAGATTCGTCACCCTTTGCTGAAGACAAGGATATGGCTGGGCACTTTCGAAACGGCGGAAGACGCCGCCAGAGCATATGACGAAGCAGCTACAATTATGTGTTGCCCTAACAATCTCCCAACCAATCACAATGCGCCACATCACCTGTCGTCGGCGCCGCCGTCGTCTAAGCTTCTAACTCCCACTTTGATCGACAAGTTGCAAAGATGTCGAATGGCTTCCCTCCACATGACCAAAACCCAATTCGCCCTCCGGAAATCAGCCGACCCAACTCACCGTCCGGCCACCAAACTCCACGACGGTCACTGGTCGGAAACAGAGGTCAAGTGGGTCGCCGGTAGGGAGGCTGAGGAGGTCCGCCGGCTTGAAGACGACCACGTGGAGCAAATGATTCAAGAGTTGCTTGATCTTGGGTCCTTTGAGTTTTGCCCTAATGATAATCATAATTTTGGTTCTACAAATAATTAG 531 51.79 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCCPNNLPTNHNAPHHLSSAPPSSKLLTPTLIDKLQRCRMASLHMTKTQFALRKSADPTHRPATKLHDGHWSETEVKWVAGREAEEVRRLEDDHVEQMIQELLDLGSFEFCPNDNHNFGSTNN 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27300801 27302162 - CcPI632755_07g013220.1 Cco07g1322 183975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1322 176 Pfam AP2 domain 7 51 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1322 176 SMART rav1_2 7 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1322 176 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1322 176 SUPERFAMILY DNA-binding domain 7 56 IPR016177 GO:0003677(InterPro)
Cco07g1322 176 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1322 176 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1322 176 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cco07g1322 176 CDD AP2 6 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1322 176 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 106 IPR050913 -
Cco07g1322 176 ProSiteProfiles AP2/ERF domain profile. 7 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1322 Cco-Chr7:27300801 Cco08g1532 Cco-Chr8:26979231 8.90E-41 dispersed
Cco07g1322 Cco-Chr7:27300801 Cco08g1531 Cco-Chr8:26971959 7.00E-38 transposed
Cco07g1322 Cco-Chr7:27300801 Cco05g1884 Cco-Chr5:27879990 7.00E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59674 PF00847 AP2 4.00E-11 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1322 - - - 0.0