Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g1322 | ATGGCAAGACCTCAACAACGCTATCGAGGAGTTCGTCAAAGGCATTGGGGCTCTTGGGTCTCTGAGATTCGTCACCCTTTGCTGAAGACAAGGATATGGCTGGGCACTTTCGAAACGGCGGAAGACGCCGCCAGAGCATATGACGAAGCAGCTACAATTATGTGTTGCCCTAACAATCTCCCAACCAATCACAATGCGCCACATCACCTGTCGTCGGCGCCGCCGTCGTCTAAGCTTCTAACTCCCACTTTGATCGACAAGTTGCAAAGATGTCGAATGGCTTCCCTCCACATGACCAAAACCCAATTCGCCCTCCGGAAATCAGCCGACCCAACTCACCGTCCGGCCACCAAACTCCACGACGGTCACTGGTCGGAAACAGAGGTCAAGTGGGTCGCCGGTAGGGAGGCTGAGGAGGTCCGCCGGCTTGAAGACGACCACGTGGAGCAAATGATTCAAGAGTTGCTTGATCTTGGGTCCTTTGAGTTTTGCCCTAATGATAATCATAATTTTGGTTCTACAAATAATTAG | 531 | 51.79 | MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCCPNNLPTNHNAPHHLSSAPPSSKLLTPTLIDKLQRCRMASLHMTKTQFALRKSADPTHRPATKLHDGHWSETEVKWVAGREAEEVRRLEDDHVEQMIQELLDLGSFEFCPNDNHNFGSTNN | 176 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 27300801 | 27302162 | - | CcPI632755_07g013220.1 | Cco07g1322 | 183975 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g1322 | 176 | Pfam | AP2 domain | 7 | 51 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g1322 | 176 | SMART | rav1_2 | 7 | 67 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g1322 | 176 | Gene3D | AP2/ERF domain | 6 | 66 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g1322 | 176 | SUPERFAMILY | DNA-binding domain | 7 | 56 | IPR016177 | GO:0003677(InterPro) | |
Cco07g1322 | 176 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g1322 | 176 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g1322 | 176 | FunFam | Ethylene-responsive transcription factor 2 | 6 | 65 | - | - | |
Cco07g1322 | 176 | CDD | AP2 | 6 | 55 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g1322 | 176 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 4 | 106 | IPR050913 | - | |
Cco07g1322 | 176 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 67 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g1322 | Cco-Chr7:27300801 | Cco08g1532 | Cco-Chr8:26979231 | 8.90E-41 | dispersed | |
Cco07g1322 | Cco-Chr7:27300801 | Cco08g1531 | Cco-Chr8:26971959 | 7.00E-38 | transposed | |
Cco07g1322 | Cco-Chr7:27300801 | Cco05g1884 | Cco-Chr5:27879990 | 7.00E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59674 | PF00847 | AP2 | 4.00E-11 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g1322 | - | - | - | 0.0 |