Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1324 ATGGCCCTTCGCCCTTTCTTATGCTGTGGAATTGGTTCGGATCGGAAAGAAAGAGGGAAGAAACAGCAAACATGGAGGGTCTTTTCGTTGAAGGAATTACACTCGGCCACAAATAATTTTAATTATGATAACAAGCTTGGAGAAGGAGGATTTGGTAGCGTTTACTGGGGTCAGCTGTGGGATGGATCACAAATAGCAGTTAAAAGGTTGAAGGTCTGGAGCAACAAAGCAGACATGGAATTCTCTGTGGAAGTTGAAATACTGGCCCGAGTTAGGCACAAGAATCTATTGAGTTTACGTGGCTACTGTGCTGAAGGGCAAGAGCGCTTGATCGTGTATGACTACATGCCCAATCTAAGTCTACTCTCCCATCTACATGGACATCACTCATCAGAATGCCACCTTGATTGGAAACGTCGTATGAAAATCGCTATTGGGTCTGCCGAGGGAATTGCCTATCTTCACCACCAAGCAACTCCACATATCATTCATCGAGACATCAAAGCTAGTAATGTTTTGCTGGATCCAGATTTCCAAGCTCGAGTAGCTGACTTTGGATTCGCAAAACTCATCCCCGATGGTGCAACACATGTAACTACAAGAGTCAAGGGCACACTCGGATACCTCGCTCCTGAATATGCTATGTTAGGTAAGGCATCAGAGAGTTGTGACGTATACAGCTTTGGCATTCTCCTGCTTGAGCTTGCTACCGGCAAGAAGCCTCTTGAGAAATTGAGTGCAACAATGAAACGCACAATCATAGATTGGGCACTACCGATTGTAGTTGAGAAAAAGATTGACGAACTTGCAGACCCGAAGCTAAATGGAGACTATAACGCAGACGAACTAAAGAGAGTCGTCCTTGTTGCGCTCTGTTGTTCCCATTCACGACCTGAGAAACGACCAACCATGCTCGAGGTGGTTGAGCTGCTAAAAGGAGAATCAAAAGAGAAGCTAGCCAAATTAGAAGATGATGAGCTGTTCAAGAGCCATCAAGTAGCTGCACAAACTACAGAAATACAAGCTGGTGAAGATAGCTCAGACTTCATATCAGAAGAAAAGGATTCAAAAGAGAAGGAGAAAGAGAATTCATCACAAAACCCCACATGA 1110 44.41 MALRPFLCCGIGSDRKERGKKQQTWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFSVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGHHSSECHLDWKRRMKIAIGSAEGIAYLHHQATPHIIHRDIKASNVLLDPDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELATGKKPLEKLSATMKRTIIDWALPIVVEKKIDELADPKLNGDYNADELKRVVLVALCCSHSRPEKRPTMLEVVELLKGESKEKLAKLEDDELFKSHQVAAQTTEIQAGEDSSDFISEEKDSKEKEKENSSQNPT 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27316064 27318999 - CcPI632755_07g013240.1 Cco07g1324 183977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1324 369 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524(InterPro)
Cco07g1324 369 CDD STKc_IRAK 46 313 - -
Cco07g1324 369 FunFam PTI1-like tyrosine-protein kinase At3g15890 12 115 - -
Cco07g1324 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1324 369 SUPERFAMILY Protein kinase-like (PK-like) 23 311 IPR011009 -
Cco07g1324 369 Gene3D Phosphorylase Kinase; domain 1 12 115 - -
Cco07g1324 369 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Cco07g1324 369 SMART serkin_6 40 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1324 369 ProSiteProfiles Protein kinase domain profile. 40 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1324 369 PANTHER OS01G0750732 PROTEIN 22 349 IPR050885 -
Cco07g1324 369 MobiDBLite consensus disorder prediction 336 369 - -
Cco07g1324 369 Coils Coil 305 325 - -
Cco07g1324 369 MobiDBLite consensus disorder prediction 347 369 - -
Cco07g1324 369 FunFam PTI1-like tyrosine-protein kinase At3g15890 116 327 - -
Cco07g1324 369 Pfam Protein kinase domain 41 309 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0925 Cco-Chr5:8070331 Cco07g1324 Cco-Chr7:27316064 2.30E-115 dispersed
Cco07g1324 Cco-Chr7:27316064 Cco11g0264 Cco-Chr11:2575393 1.70E-78 dispersed
Cco10g2222 Cco-Chr10:35234425 Cco07g1324 Cco-Chr7:27316064 3.30E-64 dispersed
Cco11g1272 Cco-Chr11:25171494 Cco07g1324 Cco-Chr7:27316064 8.00E-65 dispersed
Cco03g0416 Cco-Chr3:4460006 Cco07g1324 Cco-Chr7:27316064 6.60E-56 transposed
Cco06g1495 Cco-Chr6:25469148 Cco07g1324 Cco-Chr7:27316064 7.80E-114 transposed
Cco06g1338 Cco-Chr6:23765396 Cco07g1324 Cco-Chr7:27316064 3.90E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86982 PF00069 Pkinase 7.10E-45 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1324 - - - 0.0