Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1343 ATGGCGCATATTTTGCTTCATGGTACCCTTCATGTCACCATTTATGAAGTCGATAAGCTTCATTCTGGTGGTCGCAATTTCTTAAAACAGTTGGTTGAAAACGTAGAGGAGGCAGTTGGGTTTGGTAGAGGAGTAACGAGGCTATATGCAACCATTGATCTTGAGAAAGCCAGAGTTGGAAGAACAAGAAGGCTTGAGAAAGAACATTCAAACCCAAAATGGTACGAAACTTTCCATATCTACTGTGCTCATATGGCTTCCAACATCATCTTCACTGTCAAAGACGACAATCCCATTGGAGCAACCTTAATTGGCAGAGCATATTTGCCTGTTCGAGAGATCATACATGGTGAAGAAGTTGACAAATGGGTTCCAATCTTAGATGAACGTAAGAATCCCATTCGTGGGGAGCCCAAAATTCATGTCAAATTACAGTATTTCGATGTCACTAAGGATCAAAACTGGGGTCGTGGCATCAAAAGCCTCAAGTTTCCTGGCGTTCCCTACACTTATTTCTCCCAAAGACAAGGTTGTAAGGTAACTTTGTATCAAGATGCTCATGTTCCAGACAACTTTATCCCGAAAATCCCTCTTGCTGGAGGCAAGTTTTATGAGCCACATCGATGCTGGGAAGATATTTTTGATGCAATTACTAATGCTAAACACTTGATATATATTTCTGGATGGTCTGTTTACACCGAGATTTCTTTGGTGAGAGATAGAAGAAGGCCAAAGCCTGGTGGAGATATAATGCTCGGCGAATTGCTTAAGAAAAAGGCTGGGGAAGGAGTTAGAGTTCTTTTGCTTATTTGGAATGATACAACTTCTGTTCCTATATTGAAGGAGGAGGGCTTAATGGCAACTCATGATGAAGACACTGCTAAGTACTTTGCTAATACTGATGTCCATTGTGTTTTGTGTCCTCGCAATCCTGATGATGGGGCTAATGTTATTCAAGACATTGCTGTTGGGACAATGTTCACTCACCATCAGAAGATTGTTGTGGTGGACAGTGCTTTGCCTAGTGGGGATCCTAACAGAAGGAGAATTGTTAGTTTTGTTGGTGGGATTGATCTTTGTGATGGTAGGTATGATACCCCATTTCATTCCCTTTTCAGGACTTTGGATTCTGCTCATCATGATGATTTCCATCAGCCGAACTTCGCTGGTACTTCCATAAACAAAGGCGGTCCTAGAGAGCCGTGGCATGACATCCATTCCCGCCTTGAAGGACCCGTTGCATGGGATGTTTTGTACAACTTTGAACAGAGATGGAGGAAGCAAGGTGGGAAGGATTTGCTTGTGAAATTGAGGGATTTAGATGAGATCTTCATCACTCCATCACCTGTCACATTCCCTGATGACATCGACAGTTGGAATGTTCAAGTTTTCAGGTCTATCGATGGTGGGGCAGCTTTCGGTTTCCCCGACTCGCCTGAAGAAGCCGCAAAAGCAGGGCTGATAAGTGGAAAGGACAACACCATTGACCGAAGTATTCAAGATGCTTACATTAATGCCATTAGAAGAGCAAAGAATTTCATATACATAGAAAATCAGTATTTCCTTGGAAGCTCGTTTGACTGGAGAGGTGATGATGTGAAGCCTGAGATGATCAATGCCCTGCATCTAATCCCAAAGGAACTTTCACTCAAGATTGTGAGTAAGATTGAAGCTAGAGAGAGGTTCACAGTGTACATTGTTGTTCCAATGTGGCCTGAAGGATTTCCTGAAGGGGGAACAGTTCAAGCAATATTGGACTGGCAAAGGAGGACAATGGAAATGATGTATAAAGATATAGTTCTAGCTCTTAGAGCTAATGGCATAGAAGAGGATCCTAGAAACTATCTAACGTTCTTTTGTGTTGGGAATCGTGAAGTTAAAAAGCCTGGAGAATATGAGCCATCAGAATCACCTGAAGAAAATTCTGATTACCTTAGAGCCCAGAAATCTAGGCGCTTCATGATTTATGTTCATGCCAAGATGATGATCGTTGATGATGAATACATAATAGTGGGATCAGCCAACATCAACCAAAGATCAATGGATGGTGCAAGGGATTCAGAGATAGCAATGGGAGGTTACCAGCCATATCATTTATCAACTAGAGAGCCAGCACGAGGCCAAATCCATGGCTTCCGTTTGGCATTATGGTATGAACATTTAGGATTGCTTCATCAATCCTTCCTGTTCCCAGAAAGTGTTGAATGTGTTAAAAGAGTAAACCAACTTGCTGAAAAATATTGGGATTTATACTCAAGTGAGAGCTTTGAACATGACCTTCCTGGCCACTTGCTTCGCTACCCCATCGCCATCTCTGCTGACGGTGAAGTTACCGAGCTTCCGGGGTTCGAATACTTCCCCGACACTAAGGCGCGAGTTCTAGGTAACAAATCTAACTACCTCCCTCCAATCCTCACTACTTGA 2424 42.66 MAHILLHGTLHVTIYEVDKLHSGGRNFLKQLVENVEEAVGFGRGVTRLYATIDLEKARVGRTRRLEKEHSNPKWYETFHIYCAHMASNIIFTVKDDNPIGATLIGRAYLPVREIIHGEEVDKWVPILDERKNPIRGEPKIHVKLQYFDVTKDQNWGRGIKSLKFPGVPYTYFSQRQGCKVTLYQDAHVPDNFIPKIPLAGGKFYEPHRCWEDIFDAITNAKHLIYISGWSVYTEISLVRDRRRPKPGGDIMLGELLKKKAGEGVRVLLLIWNDTTSVPILKEEGLMATHDEDTAKYFANTDVHCVLCPRNPDDGANVIQDIAVGTMFTHHQKIVVVDSALPSGDPNRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDSAHHDDFHQPNFAGTSINKGGPREPWHDIHSRLEGPVAWDVLYNFEQRWRKQGGKDLLVKLRDLDEIFITPSPVTFPDDIDSWNVQVFRSIDGGAAFGFPDSPEEAAKAGLISGKDNTIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFDWRGDDVKPEMINALHLIPKELSLKIVSKIEARERFTVYIVVPMWPEGFPEGGTVQAILDWQRRTMEMMYKDIVLALRANGIEEDPRNYLTFFCVGNREVKKPGEYEPSESPEENSDYLRAQKSRRFMIYVHAKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGGYQPYHLSTREPARGQIHGFRLALWYEHLGLLHQSFLFPESVECVKRVNQLAEKYWDLYSSESFEHDLPGHLLRYPIAISADGEVTELPGFEYFPDTKARVLGNKSNYLPPILTT 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27531667 27535568 - CcPI632755_07g013430.1 Cco07g1343 183996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1343 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 363 IPR001736 GO:0003824(InterPro)
Cco07g1343 807 Pfam Phospholipase D Active site motif 655 680 IPR001736 GO:0003824(InterPro)
Cco07g1343 807 Pfam Phospholipase D Active site motif 326 363 IPR001736 GO:0003824(InterPro)
Cco07g1343 807 SUPERFAMILY Phospholipase D/nuclease 497 737 - -
Cco07g1343 807 SUPERFAMILY Phospholipase D/nuclease 150 435 - -
Cco07g1343 807 Pfam C2 domain 10 125 IPR000008 -
Cco07g1343 807 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Cco07g1343 807 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Cco07g1343 807 FunFam Phospholipase D 466 699 - -
Cco07g1343 807 PANTHER PHOSPHOLIPASE D 5 794 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Cco07g1343 807 PIRSF PLD_plant 1 807 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Cco07g1343 807 Gene3D Endonuclease Chain A 200 440 - -
Cco07g1343 807 SMART C2_3c 9 123 IPR000008 -
Cco07g1343 807 Pfam Phospholipase D C terminal 726 797 IPR024632 -
Cco07g1343 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 680 IPR001736 GO:0003824(InterPro)
Cco07g1343 807 Gene3D Endonuclease Chain A 475 696 - -
Cco07g1343 807 FunFam Phospholipase D delta 200 443 - -
Cco07g1343 807 SMART pld_4 325 363 IPR001736 GO:0003824(InterPro)
Cco07g1343 807 SMART pld_4 653 680 IPR001736 GO:0003824(InterPro)
Cco07g1343 807 Gene3D C2 domain 6 157 IPR035892 -
Cco07g1343 807 CDD C2_plant_PLD 2 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1343 Cco-Chr7:27531667 Cco08g1502 Cco-Chr8:26761848 0.00E+00 dispersed
Cco07g1442 Cco-Chr7:28524465 Cco07g1343 Cco-Chr7:27531667 1.70E-173 transposed
Cco07g1343 Cco-Chr7:27531667 Cco09g0271 Cco-Chr9:2413920 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1343 K01115 - csv:101215246 1599.72