Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g1345 | ATGGCGAAACAACAAAAGAAGTTTAGAGGAGTGAGGCAACGGCGATGGGGCTCATGGGTCTCCGAGATTCGTCATCCTCTTCTGAAGAGAAGGGTTTGGTTGGGAACGTTTGAAACGGCCGAAGACGCGGCTCGAGCCTACGATGAAGCTGCTGTTCTCATGAGCGGTCGAACTGCAAAAACCAACTTTCCAATGTCGACCGCTCTGGTTCGAAGCGAAGCTAGAAATATTCCTCCATTTTCGTCATTGTCAACAATTCTCAACACTAAACTTCGCAAGTGTTGGAAATCTTTTCCTCCTTCTCTAACTTGCCTTCGTCTCGATGCCGAGAGTTGTCGCATTGGCGTTTGGCAGAGGCGTGCGGGACGCTGTCGAGTGGTCGACTCGAACTGGGTGATGATGGTGGAGCTCGAGAAGAAGAAGAACGACGAATTCCGAGTAACGGATGAGTCGTCGGAAAAGGGTGCAGAAGATCAGGTGAGACTTTCAGATGGGGCAAAAAGTTTAGACGAGGAAGAAAGAGCTGCTTTACAAATGATCGAAGAACTTTTGAATAGGATATGA | 564 | 48.58 | MAKQQKKFRGVRQRRWGSWVSEIRHPLLKRRVWLGTFETAEDAARAYDEAAVLMSGRTAKTNFPMSTALVRSEARNIPPFSSLSTILNTKLRKCWKSFPPSLTCLRLDAESCRIGVWQRRAGRCRVVDSNWVMMVELEKKKNDEFRVTDESSEKGAEDQVRLSDGAKSLDEEERAALQMIEELLNRI | 187 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 27552298 | 27553134 | + | CcPI632755_07g013450.1 | Cco07g1345 | 183998 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g1345 | 187 | SUPERFAMILY | DNA-binding domain | 7 | 66 | IPR016177 | GO:0003677(InterPro) | |
Cco07g1345 | 187 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g1345 | 187 | FunFam | Ethylene-responsive transcription factor 2 | 6 | 65 | - | - | |
Cco07g1345 | 187 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g1345 | 187 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g1345 | 187 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g1345 | 187 | Pfam | AP2 domain | 7 | 51 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g1345 | 187 | Coils | Coil | 166 | 186 | - | - | |
Cco07g1345 | 187 | Gene3D | AP2/ERF domain | 6 | 66 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g1345 | 187 | CDD | AP2 | 6 | 66 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g1345 | 187 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 3 | 141 | IPR050913 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g1928 | Cco-Chr5:28390230 | Cco07g1345 | Cco-Chr7:27552298 | 3.50E-51 | dispersed | |
Cco07g1345 | Cco-Chr7:27552298 | Cco08g1531 | Cco-Chr8:26971959 | 3.50E-27 | dispersed | |
Cco11g0324 | Cco-Chr11:3253956 | Cco07g1345 | Cco-Chr7:27552298 | 3.90E-47 | wgd | |
Cco06g1292 | Cco-Chr6:23095079 | Cco07g1345 | Cco-Chr7:27552298 | 6.20E-44 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59675 | PF00847 | AP2 | 4.60E-12 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g1345 | - | - | - | 0.0 |