Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1345 ATGGCGAAACAACAAAAGAAGTTTAGAGGAGTGAGGCAACGGCGATGGGGCTCATGGGTCTCCGAGATTCGTCATCCTCTTCTGAAGAGAAGGGTTTGGTTGGGAACGTTTGAAACGGCCGAAGACGCGGCTCGAGCCTACGATGAAGCTGCTGTTCTCATGAGCGGTCGAACTGCAAAAACCAACTTTCCAATGTCGACCGCTCTGGTTCGAAGCGAAGCTAGAAATATTCCTCCATTTTCGTCATTGTCAACAATTCTCAACACTAAACTTCGCAAGTGTTGGAAATCTTTTCCTCCTTCTCTAACTTGCCTTCGTCTCGATGCCGAGAGTTGTCGCATTGGCGTTTGGCAGAGGCGTGCGGGACGCTGTCGAGTGGTCGACTCGAACTGGGTGATGATGGTGGAGCTCGAGAAGAAGAAGAACGACGAATTCCGAGTAACGGATGAGTCGTCGGAAAAGGGTGCAGAAGATCAGGTGAGACTTTCAGATGGGGCAAAAAGTTTAGACGAGGAAGAAAGAGCTGCTTTACAAATGATCGAAGAACTTTTGAATAGGATATGA 564 48.58 MAKQQKKFRGVRQRRWGSWVSEIRHPLLKRRVWLGTFETAEDAARAYDEAAVLMSGRTAKTNFPMSTALVRSEARNIPPFSSLSTILNTKLRKCWKSFPPSLTCLRLDAESCRIGVWQRRAGRCRVVDSNWVMMVELEKKKNDEFRVTDESSEKGAEDQVRLSDGAKSLDEEERAALQMIEELLNRI 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27552298 27553134 + CcPI632755_07g013450.1 Cco07g1345 183998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1345 187 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Cco07g1345 187 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1345 187 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cco07g1345 187 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1345 187 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1345 187 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1345 187 Pfam AP2 domain 7 51 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1345 187 Coils Coil 166 186 - -
Cco07g1345 187 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1345 187 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1345 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 141 IPR050913 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1928 Cco-Chr5:28390230 Cco07g1345 Cco-Chr7:27552298 3.50E-51 dispersed
Cco07g1345 Cco-Chr7:27552298 Cco08g1531 Cco-Chr8:26971959 3.50E-27 dispersed
Cco11g0324 Cco-Chr11:3253956 Cco07g1345 Cco-Chr7:27552298 3.90E-47 wgd
Cco06g1292 Cco-Chr6:23095079 Cco07g1345 Cco-Chr7:27552298 6.20E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59675 PF00847 AP2 4.60E-12 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1345 - - - 0.0