Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1363 ATGGAGAATCTAAGGGCTCCATTTAGGGGTATTGTGGGTGATATCAGAGGAAGAGCGGCCTGTTATAAGCAAGATTGGGTTGATGGTCGACTTTCAGGGATTGGAATTTTGGCCCCAACTGCTTACATTTTTTTTGCTTCTGCACTTCCTGTCATTGCTTTTGGTGAGCAATTGAGCCGAGATACAGATGGAAGCTTGAGCACAGTAGAAACATTGGCTTCCACAGCCATTTGTGGCATCCTTCATTCCATTCTTGGTGGGCAACCTCTCCTAGTTGTAGGAGTTGCAGAACCTACAATTATTATGTATACTTATTTGTACAATTTTTGCAAGAAAAGGGAAGATATAGGGGGAGACCTCTTCTTGGCTTGGGCAGGATGGGTTTGTGTCTGGACAGCCCTCTTGCTGTTTCTTCTTGCTATATTCAACGCTTCCAGTCTAATCAACAAATTTACAAGGATTGCAGGGGAACTTTTTGGCATGTTAATCTCCGTTTTGTTCATTCAAGAAGCTATTAAGGGAGTGGTGAGCGAATTTGAAGTTCCCCAGACCGAAAACACAAGTCTAGAGAAGTATCAATTTCATTGGCTTTACACGAATGGATTACTGGGAATCATCTTTACTTTTGGCCTTCTCTATACTGCCTTGAAGAGCAGAAAGGCAAGATCGTGGTTGTATGGGACAGGCTGGCTAAGGAGTTTCATTGCAGACTATGGAGTTCCTCTGATGGTTGTAGTATGGACTGCACTATCATTTAGTGTACCAAGCAAAGTCCCGTTTGGAGTTCCTAGAAGACTTCAAAGTCCTTTGGCATGGCAATCTACTTCTCTGCACCATTGGACCATTGTCAAGGACATGGGGAAGATACCTCCTGCATACATCTTCATGGCCTTTATTCCTGCTGTGATGATTGCAGGACTTTATTTTTTTGATCATAGTGTCGCTTCTCAGATGGCACAACAAAAGGAGTTTAATCTCAAGAACCCTCCTGCTTACCACTATGACATCCTGTTGCTGGGATTTATGACGTTGGTTTGTGGGTTAATCGGGCTTCCTCCTTCAAATGGGGTCTTGCCACAGTCCCCCATGCACACCAAGTGTCTTGCAACTCTCAGGAGGCGTTTGATGCGAAGGAAGATGGTAGAAAGTGCAAAGGAAAGCATAAAAAGGAAAGCTAGTGATTCCGAAATCTACGGCCAAATGCAAGCTGTGTTCTTAGAAATGGAGAGCAGCCCAATTACGACATCAGTAGTCAAAGAACTGGAAGATTTGAAGGAGGCAGTCATGAAAGGTGAAAGTAAGGATGAAAATGCAAATGTTACATTTGACCCAGAGAAGCATATTGATGCTTATCTTCCTGTTCGAGTGAACGAGCAAAGATTGAGCAATCTACTGCAATCACTTCTGGTGGCAGCATCAGTATTTGCTTTACCAGCAATAAAGAAGATACCAACATCAGTTCTCTGGGGGTACTTCGCGTATATGGCCATTGACAGTCTACCCGGAAACCAATTTTGGGAAAGGATTTTACTTCTCTTTGTAATGCCTAGTCGACGTTACAAGGTCCTAGAAGGTTTTCATGCTTCCTTCGTGGAGTCTGTTCCATTCAAATACATAGCCGCATTCACCCTATTTCAATTTGTATATTTTCTCATTTGTTTTGGAGTGACTTGGATCCCCATAGCTGGAGTCTTGTTTCCTTTGCCTTTCTTCCTTCTCATCGGCATCAGACATCGCATCCTTCCCAAGCTACTCCAACCTCATTATTTGCAGGAGCTCGACGCGGTTGAGTACGAAGAACTAACCGGTACCTCAATTCTCTCGCTTAGCTTGTCTATCAAGGAAAAGAATACCACTCATTCATCCTGA 1869 43.45 MENLRAPFRGIVGDIRGRAACYKQDWVDGRLSGIGILAPTAYIFFASALPVIAFGEQLSRDTDGSLSTVETLASTAICGILHSILGGQPLLVVGVAEPTIIMYTYLYNFCKKREDIGGDLFLAWAGWVCVWTALLLFLLAIFNASSLINKFTRIAGELFGMLISVLFIQEAIKGVVSEFEVPQTENTSLEKYQFHWLYTNGLLGIIFTFGLLYTALKSRKARSWLYGTGWLRSFIADYGVPLMVVVWTALSFSVPSKVPFGVPRRLQSPLAWQSTSLHHWTIVKDMGKIPPAYIFMAFIPAVMIAGLYFFDHSVASQMAQQKEFNLKNPPAYHYDILLLGFMTLVCGLIGLPPSNGVLPQSPMHTKCLATLRRRLMRRKMVESAKESIKRKASDSEIYGQMQAVFLEMESSPITTSVVKELEDLKEAVMKGESKDENANVTFDPEKHIDAYLPVRVNEQRLSNLLQSLLVAASVFALPAIKKIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVMPSRRYKVLEGFHASFVESVPFKYIAAFTLFQFVYFLICFGVTWIPIAGVLFPLPFFLLIGIRHRILPKLLQPHYLQELDAVEYEELTGTSILSLSLSIKEKNTTHSS 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27693852 27697936 - CcPI632755_07g013630.1 Cco07g1363 184016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1363 622 PANTHER ANION EXCHANGE PROTEIN 4 601 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Cco07g1363 622 Pfam HCO3- transporter integral membrane domain 454 596 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Cco07g1363 622 Pfam HCO3- transporter integral membrane domain 196 373 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Cco07g1363 622 Pfam HCO3- transporter integral membrane domain 7 190 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Cco07g1363 622 Gene3D Helical hairpin bin 18 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0534 Cco-Chr1:5148919 Cco07g1363 Cco-Chr7:27693852 1.50E-282 transposed
Cco01g1462 Cco-Chr1:26439814 Cco07g1363 Cco-Chr7:27693852 1.30E-215 transposed
Cco10g1160 Cco-Chr10:24152850 Cco07g1363 Cco-Chr7:27693852 9.10E-217 transposed
Cco07g1363 Cco-Chr7:27693852 Cco08g1470 Cco-Chr8:26547740 7.50E-260 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1363 K24194 - csv:101210964 1147.5