Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1383 ATGGATTTCTGGCCGGAATTTCTCGCTAGCAGTTGGGGAAAAGAGTTCGTCGCCGGTGGAATCGGCGGTGTCGCCGGCATCGTCTCCGGCTACCCACTCGACACCCTTCGCATCCGTCAACAACACTCCACCTCCGGCTCCGCCATCAGCGTCCTCCGTAACATCATGTCCAACGGCGGCCCGGCCGCCCTCTACAGAGGAATGGGAGCTCCACTCGCTTCCGTCACTTTCCAGAACGCCATTGTTTTCCAGACCAACGCCGTGCTCTGCAGAGCGTTCGATCCAGCGGCGACAGACAACCGTCCACCGTCGTACAAGGCGGTAGCATTAGGCGGATTCGGCACCGGAGCATTACAGAGCCTAATTTTAACACCGGTGGAGCTCGTGAAAATCCGTCTTCAATTACAGGACTTGGGTTCATCAAATCACACAGATCTGAGTTCATCTCGGCTCGGGCCGATGCAGGTTGCGAAGAACATTTTCAAAACCGAAGGCTACAAAGGGCTATACAGAGGCTTAACAATCACAATGCTAAGAGACGCTCCTTCCCATTGCTTTTACTTTTGGACTTACGAATTCATGAGAGAAAAGCTTCATCCCGGTTGTAGAAAATCCGGGCAAGAGACGTTGAGAACGATGCTGGTAGCCGGAGGACTCGCCGGCGTCGCCAGTTGGGTTTGTTGTTACCCATTGGATGTAGTTAAAACCAGACTTCAAGCTCAATCGAAATTCACGTTTCAAAAGTACAGTGGAATTGTGGATTGTTTCTACAAGAGCGTGAAAGAAGAAGGGTACAGTGTTTTATGGCGTGGATTAGGAACCGCCATAGCTAGAGCTTTTGTGGTGAATGGAGCCATTTTTTCTGCTTATGAACTCAGTTTGAGATGTCTATCCAACAATGGAGGATTTCACGCTGAAAATACCATTTGA 930 50.43 MDFWPEFLASSWGKEFVAGGIGGVAGIVSGYPLDTLRIRQQHSTSGSAISVLRNIMSNGGPAALYRGMGAPLASVTFQNAIVFQTNAVLCRAFDPAATDNRPPSYKAVALGGFGTGALQSLILTPVELVKIRLQLQDLGSSNHTDLSSSRLGPMQVAKNIFKTEGYKGLYRGLTITMLRDAPSHCFYFWTYEFMREKLHPGCRKSGQETLRTMLVAGGLAGVASWVCCYPLDVVKTRLQAQSKFTFQKYSGIVDCFYKSVKEEGYSVLWRGLGTAIARAFVVNGAIFSAYELSLRCLSNNGGFHAENTI 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27937686 27938768 + CcPI632755_07g013830.1 Cco07g1383 184036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1383 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 197 IPR018108 -
Cco07g1383 309 SUPERFAMILY Mitochondrial carrier 11 291 IPR023395 -
Cco07g1383 309 Gene3D Mitochondrial carrier domain 9 304 IPR023395 -
Cco07g1383 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
Cco07g1383 309 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 8 298 IPR050567 GO:0006810(PANTHER)|GO:0022857(PANTHER)
Cco07g1383 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 296 IPR018108 -
Cco07g1383 309 PRINTS Mitochondrial carrier protein signature 170 188 IPR002067 GO:0055085(InterPro)
Cco07g1383 309 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085(InterPro)
Cco07g1383 309 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085(InterPro)
Cco07g1383 309 PRINTS Mitochondrial carrier protein signature 217 239 IPR002067 GO:0055085(InterPro)
Cco07g1383 309 Pfam Mitochondrial carrier protein 109 198 IPR018108 -
Cco07g1383 309 Pfam Mitochondrial carrier protein 211 299 IPR018108 -
Cco07g1383 309 Pfam Mitochondrial carrier protein 11 87 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1383 Cco-Chr7:27937686 Cco09g1228 Cco-Chr9:12497437 8.50E-47 dispersed
Cco10g2213 Cco-Chr10:35174602 Cco07g1383 Cco-Chr7:27937686 3.80E-26 transposed
Cco07g1383 Cco-Chr7:27937686 Cco09g0206 Cco-Chr9:1835234 5.60E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1383 K15109 - csv:101222749 602.823