Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1389 ATGGGTGCCGACATGTCCAACAATAATAATACTAATCGCCTTGCTTTTACCAAAGACTTCTTCTCCTCTCCGGCTCTTTCTCTTACCCTTGCGGGGATTTTCCGTCGGGATGAGGTGGCGGAGAAGGGAGATGTTGAGATGGAGGAGGTGGACGACGGTAGCGGTGGAGCGCGGAGAGATGATACGGCGGCGGAAGTTAGTAGCGAGAATTCAGGACCAGTGAGGTCGAGATCGGACGACGACGGTTTCGACGGCGGAGGAGCGCACGACGAGAATGAAGATGGGGTGGATCATGGGTGTCATGTAAAGAGAAGGAAGAAATATCATCGACATACAACCGAGCAGATCAGAGAAATGGAGGCGCTGTTTAAAGAGTCGCCACATCCAGATGAGAAGCAAAGGCAACAACTTAGCAAGCGATTAGGACTTTCGCCAAGGCAGGTCAAGTTTTGGTTCCAAAATCGTCGAACTCAAATAAAAGCTATTCAAGAGCGGCATGAAAACACATTGTTAAAAGCTGAAATGGAGAAACTTCGAGAAGAAATTAAAGGAATGAGAGAAATTTGTAGGAAAAAAGTTGATTGTCCAAACTGTGGGACGGCCGACGCCGGTGAAGACCACGTCGCTTTTACAACCACGGAGCAATTGCGTATTAAGAACGCCAAGCTCAAAGCCGAGGTTGAGAAACTACGAGCGGCACTGGGAAAATACCCACAAGCAGCGGCGTCTCCTTCATATTCACCAGGGAACGAGCAAGAGACGAGGAAACGAAGCTGTTTAGATTTTTACACAGGAATTTTCGGGGTTGAAAAGTCAAGGATGATGGAGAAAGTTGATGAAGCTGTTGAAGAGCTGAAAACAATGGCTACCGCTGGCGACCCACTATGGGTCCGCAGCGTGGAGAGCGGAAGACAGATATTAAACTACGATGAGTACTTGAAAACCTTCCATTTCAACAATAATAATAATTCCGACACTCGTTCCCTCAAAACACACATTGAAGCCTCACGTGAGACTGCCCTTGTTTTCATGGACCCCTCTAGGTTGGTTCAAAGCTTCATGGATGAGAATCAATGGAAGGAGATGTTTCCTTTCATGATCTCCAAGGCAGCTACAGTTGATGTTATTTGTAATGGAGAAGCTGCCAATTTGAATAATGGCGCAGTGCAATTGATGTTTGCAGAAGTGCAAATGCTTACACCATTAGTTCCCACGAGAGAAATGTATTTCATTCGCCATTGCAAGCAGCTCGATGCCGAACAATGGGCGATAGTCGATGTTTCGATTGAAAACATTGAAGATAACAATAATATCGATGCATCGTTGGTAAAATACAGAAAACGTCCATCTGGTTGCATCATTAAGGATGAATCTAATGGTCATTGCAAGGTAACAATGGTGGAACATTTGGAATGTGAAAAAAACAAAGTTCACAACTTGTATAGAAACATAGTGAACAATGGCACTGCCTTCGGGGCAAGACATTGGATGGCAACTCTCCAACTCCAATGTGAACGCCTTGCTTTCTTCATGGCAACCAACATCCCCATGAAAGACTCAGCTGGAGTTGCAACACTAGCTGGAAGAAAAAGCACATTAAAGTTGGCACAGAGAATGAGTTCAAGCTTCTCCCAAGCAATTGCAGCTTCAAGTTATCAAACATGGACCAAAGTTGTGGGGAAAACAGGGGAAGACATTAGGGTTTGTTCAAGGAAGAATCTTAGTGACCCTGGTGAACCCATTGGAGTCATTTTGTGTGCAGTTTCTTCTCTTTGGTTGCCTCTTTCTCCCCATCTTCTCTTTGATTTTTTCAGAGATGAATCTCGTCGAAATCAGTGGGACGCCATGTTTGGTGGAGATAAAGTTAAGTCCATTGCAAATTTAGCTAAAGGACAGGATCGAGGCAATTCAGTTACCATTCAAACAATAGGATCAAAAGAGAGCAACAACATATGGATCCTACAAGACTGCTCCACAAACTCATCGGAATCCATGGTGGTATACTCTGGAGTAGACATTAGCAGCATGCAGTCAGTGATGTCTGGTTGTGATTCCGGCAGCGTCGCCATCCTCCCTTCAGGCTTTTCAATTCTCCCCGACGGCGCCGACTCCCGGCCGCCCCTGCTCATCACTCGTCGTAAAGACGACAAAGCTTCCGACAATCATGGCGGCGTTCTACTCACCGCGGCCGTCCAAATCCTCACCGATACGTCTCCCTCTGCAAAACCCACCATGGAATCCATCGAGTACGTTAAAAGCATCATTTGTTGTACGCTCAAAAATATTAGAACCAGCATGTGCTGTGAGGATGATTGA 2316 45.81 MGADMSNNNNTNRLAFTKDFFSSPALSLTLAGIFRRDEVAEKGDVEMEEVDDGSGGARRDDTAAEVSSENSGPVRSRSDDDGFDGGGAHDENEDGVDHGCHVKRRKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIKAIQERHENTLLKAEMEKLREEIKGMREICRKKVDCPNCGTADAGEDHVAFTTTEQLRIKNAKLKAEVEKLRAALGKYPQAAASPSYSPGNEQETRKRSCLDFYTGIFGVEKSRMMEKVDEAVEELKTMATAGDPLWVRSVESGRQILNYDEYLKTFHFNNNNNSDTRSLKTHIEASRETALVFMDPSRLVQSFMDENQWKEMFPFMISKAATVDVICNGEAANLNNGAVQLMFAEVQMLTPLVPTREMYFIRHCKQLDAEQWAIVDVSIENIEDNNNIDASLVKYRKRPSGCIIKDESNGHCKVTMVEHLECEKNKVHNLYRNIVNNGTAFGARHWMATLQLQCERLAFFMATNIPMKDSAGVATLAGRKSTLKLAQRMSSSFSQAIAASSYQTWTKVVGKTGEDIRVCSRKNLSDPGEPIGVILCAVSSLWLPLSPHLLFDFFRDESRRNQWDAMFGGDKVKSIANLAKGQDRGNSVTIQTIGSKESNNIWILQDCSTNSSESMVVYSGVDISSMQSVMSGCDSGSVAILPSGFSILPDGADSRPPLLITRRKDDKASDNHGGVLLTAAVQILTDTSPSAKPTMESIEYVKSIICCTLKNIRTSMCCEDD 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27966644 27975199 - CcPI632755_07g013890.1 Cco07g1389 184042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1389 771 FunFam Homeobox-leucine zipper protein HDG1 89 178 - -
Cco07g1389 771 SUPERFAMILY Bet v1-like 529 703 - -
Cco07g1389 771 Gene3D - 278 505 IPR023393 -
Cco07g1389 771 SUPERFAMILY Bet v1-like 270 507 - -
Cco07g1389 771 Coils Coil 161 188 - -
Cco07g1389 771 ProSiteProfiles START domain profile. 267 509 IPR002913 GO:0008289(InterPro)
Cco07g1389 771 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 92 768 IPR042160 -
Cco07g1389 771 Pfam START domain 279 506 IPR002913 GO:0008289(InterPro)
Cco07g1389 771 Gene3D - 94 175 - -
Cco07g1389 771 SUPERFAMILY Homeodomain-like 93 163 IPR009057 -
Cco07g1389 771 ProSitePatterns 'Homeobox' domain signature. 137 160 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco07g1389 771 MobiDBLite consensus disorder prediction 37 112 - -
Cco07g1389 771 MobiDBLite consensus disorder prediction 37 65 - -
Cco07g1389 771 SMART START_1 275 506 IPR002913 GO:0008289(InterPro)
Cco07g1389 771 Pfam Homeodomain 105 160 IPR001356 GO:0003677(InterPro)
Cco07g1389 771 Coils Coil 213 233 - -
Cco07g1389 771 ProSiteProfiles 'Homeobox' domain profile. 102 162 IPR001356 GO:0003677(InterPro)
Cco07g1389 771 SMART HOX_1 104 166 IPR001356 GO:0003677(InterPro)
Cco07g1389 771 MobiDBLite consensus disorder prediction 74 101 - -
Cco07g1389 771 FunFam Homeobox-leucine zipper protein GLABRA 2 276 505 - -
Cco07g1389 771 CDD homeodomain 105 160 IPR001356 GO:0003677(InterPro)
Cco07g1389 771 CDD START_ArGLABRA2_like 271 505 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0006 Cco-Chr6:87865 Cco07g1389 Cco-Chr7:27966644 1.90E-149 dispersed
Cco07g1389 Cco-Chr7:27966644 Cco09g1176 Cco-Chr9:11579859 6.90E-122 dispersed
Cco07g1389 Cco-Chr7:27966644 Cco09g0190 Cco-Chr9:1755239 1.70E-208 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59679 PF01852 START 1.30E-54 CL0209 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1389 K09338 - csv:101221341 1326.23