Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g1406 | ATGGCGGAACCAAACAATTGGAATTCAGAATCTGAAAGTACAGAAATGAAAAGGGGAAAACAGACGGATCGAGAACAGAGAGATCAGAAACACCCAATTTACAGAGGCGTACGGAGAAGGAGTTGGGGTAAATGGGTGTCGGAGATCCGACAGCCGAGGAAGAAGTCTCGGATTTGGCTTGGGACTTTCACGACGGCGGAGATGGCAGCGCGTGCACACGACGTGGCGGCGCTCAGCATCAAAGGTGATTCAGCAAAGGCCATTCTCAATTTCCCTCAACTCGCTGGTTTGCTTCCACGGCCGGTGTCCTTAATGCCGAGGGATATTCAGGAGGCGGCTGCCAAGGCGGCGGCCATGGTCGATTTCGATTCCACTACGGCGTCGTTTTCGTCGTTTAATGATGAAGAAGGGTCAGAGGAATTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGATATCAGAGCTGAGTCGTGGAACGAGTTCGAGTTCATTGACTCGGTTGATTGGTGGGGAAATCCGCCGTTTGCGGCCGGGGAATTGGATTTCTGTGCGGTGTTTTCAGATCAGAGTACTACTCCGGTTACCTTCGACGGCGGCGATTGGGAGTAA | 612 | 51.96 | MAEPNNWNSESESTEMKRGKQTDREQRDQKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWLGTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMVDFDSTTASFSSFNDEEGSEELGEIVELPNIEEDIRAESWNEFEFIDSVDWWGNPPFAAGELDFCAVFSDQSTTPVTFDGGDWE | 203 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 28118035 | 28118646 | - | CcPI632755_07g014060.1 | Cco07g1406 | 184059 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g1406 | 203 | Gene3D | AP2/ERF domain | 33 | 93 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g1406 | 203 | ProSiteProfiles | AP2/ERF domain profile. | 33 | 92 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g1406 | 203 | MobiDBLite | consensus disorder prediction | 13 | 32 | - | - | |
Cco07g1406 | 203 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Cco07g1406 | 203 | Pfam | AP2 domain | 33 | 82 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g1406 | 203 | SUPERFAMILY | DNA-binding domain | 33 | 93 | IPR016177 | GO:0003677(InterPro) | |
Cco07g1406 | 203 | SMART | rav1_2 | 33 | 98 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g1406 | 203 | FunFam | Ethylene-responsive transcription factor 2 | 32 | 93 | - | - | |
Cco07g1406 | 203 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 15 | 152 | IPR051032 | - | |
Cco07g1406 | 203 | CDD | AP2 | 32 | 92 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g1406 | 203 | PRINTS | Ethylene responsive element binding protein signature | 56 | 72 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g1406 | 203 | PRINTS | Ethylene responsive element binding protein signature | 34 | 45 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g1406 | Cco-Chr7:28118035 | Cco09g0176 | Cco-Chr9:1626472 | 2.60E-44 | dispersed | |
Cco11g1618 | Cco-Chr11:28992911 | Cco07g1406 | Cco-Chr7:28118035 | 2.40E-13 | dispersed | |
Cco07g1406 | Cco-Chr7:28118035 | Cco08g1380 | Cco-Chr8:25730078 | 2.80E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59681 | PF00847 | AP2 | 9.40E-14 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g1406 | K09286 | - | csv:101222354 | 363.229 |