Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1406 ATGGCGGAACCAAACAATTGGAATTCAGAATCTGAAAGTACAGAAATGAAAAGGGGAAAACAGACGGATCGAGAACAGAGAGATCAGAAACACCCAATTTACAGAGGCGTACGGAGAAGGAGTTGGGGTAAATGGGTGTCGGAGATCCGACAGCCGAGGAAGAAGTCTCGGATTTGGCTTGGGACTTTCACGACGGCGGAGATGGCAGCGCGTGCACACGACGTGGCGGCGCTCAGCATCAAAGGTGATTCAGCAAAGGCCATTCTCAATTTCCCTCAACTCGCTGGTTTGCTTCCACGGCCGGTGTCCTTAATGCCGAGGGATATTCAGGAGGCGGCTGCCAAGGCGGCGGCCATGGTCGATTTCGATTCCACTACGGCGTCGTTTTCGTCGTTTAATGATGAAGAAGGGTCAGAGGAATTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGATATCAGAGCTGAGTCGTGGAACGAGTTCGAGTTCATTGACTCGGTTGATTGGTGGGGAAATCCGCCGTTTGCGGCCGGGGAATTGGATTTCTGTGCGGTGTTTTCAGATCAGAGTACTACTCCGGTTACCTTCGACGGCGGCGATTGGGAGTAA 612 51.96 MAEPNNWNSESESTEMKRGKQTDREQRDQKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWLGTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMVDFDSTTASFSSFNDEEGSEELGEIVELPNIEEDIRAESWNEFEFIDSVDWWGNPPFAAGELDFCAVFSDQSTTPVTFDGGDWE 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28118035 28118646 - CcPI632755_07g014060.1 Cco07g1406 184059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1406 203 Gene3D AP2/ERF domain 33 93 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1406 203 ProSiteProfiles AP2/ERF domain profile. 33 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1406 203 MobiDBLite consensus disorder prediction 13 32 - -
Cco07g1406 203 MobiDBLite consensus disorder prediction 1 34 - -
Cco07g1406 203 Pfam AP2 domain 33 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1406 203 SUPERFAMILY DNA-binding domain 33 93 IPR016177 GO:0003677(InterPro)
Cco07g1406 203 SMART rav1_2 33 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1406 203 FunFam Ethylene-responsive transcription factor 2 32 93 - -
Cco07g1406 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 152 IPR051032 -
Cco07g1406 203 CDD AP2 32 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1406 203 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1406 203 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1406 Cco-Chr7:28118035 Cco09g0176 Cco-Chr9:1626472 2.60E-44 dispersed
Cco11g1618 Cco-Chr11:28992911 Cco07g1406 Cco-Chr7:28118035 2.40E-13 dispersed
Cco07g1406 Cco-Chr7:28118035 Cco08g1380 Cco-Chr8:25730078 2.80E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59681 PF00847 AP2 9.40E-14 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1406 K09286 - csv:101222354 363.229