Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1410 ATGTTTTGGTCAATGAATCCTGTACGAATTCGCAGTTTGTTCTTCCTTCTATACTTCGCTGTTCTTCTTCAAGATCATTCCCTCTGTTCTTCTTATCCCACGCCCTTGAATTGTACGGACACAACCCGTTTATGTACCTCGTTTTTGGCCTTCAAGCCTCAGCCAAATCAGACACTTTCTGTGATCCAGAGCATGTTCGACGTATTGCCTGAAGATGTAACTGTGGAAGGCAATGGTCAGGACTATGTGTTCATCAGGAAGAACTGTTCCTGTGCCTCTGGGTTGAAGAAATACATAACCAACACCACTTTTACCATCAAATCCAATCACGGTCATGTATATGATATAGTCATGGAAGCGTATGATGGGCTTGCGCTGTTGCCCAACACAACCCGAATGGCGAGGAACGGCGCTGTTGTGTCTTTGAGATTGTTTTGTGCTTGTTCAAGCGGGTTGTGGAACTATTTGATGAGCTATGTGATGAGAGATGGTGACACCATAGAGTCTTTGGCTAGCCGATTTGGGGTTAGTATGGATAGCATTGAGTCGGTGAATGGAATTGAAAATCCCGGCAATGTCACTGTGGGTGCTTTGTATTATGTTCCCTTGAATTCGGTTCCTGGCGATCCTTATCCGTTGGAGACAGACATTTATCCTGCTCCTACTCCAGCTCCTTCCTATACTCAGAACAATTTCTCAGATAATGCTCAGAACCCCAAGCGTCATCCTCCATATATATGGATTGTTGGAAGTTTGGGAATTATTCTTGTTCTGATTTTGGTAGGCATAGTAGGTTATGCTTGCTTCAGGTGGTTGAAGTGCTTTTCTAGATCAAGGAGTAGCCACTCCAAAGATCCCGGTGGCAAGGTTTCCCACAAGTTCCATATTCTTGGGAAGTCAAGTTTCTGCTGTGCTTCAGGAAGGTATATTTGCTGCAGTTCTGCTGATTGGAAGCAAGCCAATGGGGAATCTACCGACAACCAGAGTGCAATTCCAAAAGCTATCGAGAGTAATGTATTTGATGTAGACAAACCTGTGGTTTTTTCATGCGAAGAAATTTTTTCCTCAACTGATAGTTTCTCTGATTCAAGTCTACTTGGCCATGGAACTTATGGTTCAGTGTATTATGGCATCCTGCGTGACCAGGAAGTTGCTATAAAAAGAATGACTGCAACAAAAACTAAAGAGTTTATGGCAGAGATGAAAGTCCTCTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATTGGTTATGCAGCCAGTGAGGAGGAGCTTTTTCTTATTTATGAATATGCTCAAAAAGGTCCCCTCAAAAACCATTTGCATGATCCTCTGAACAAGGGTCATACACCGCTATCTTGGATTATGAGACTCCAAATTGCTTTGGACGCTGCGAGGGGTCTTGAATACATTCACGAGCATACTAAAACTCATTATGTTCATAGAGATATCAAGACAAGCAACATCTTACTTGATGGTTCTTTTAGGGCAAAGATTTCTGACTTTGGGTTGGCCAAACTTGTTGGAAAAACAAACGAGGGTGAAGCTACAGTAACGAAAGTTGTTGGCACATACGGCTATTTGGCTCCTGAATATTTGAGTAACGGTCTTGCGACAACCAAAAGTGATGTGTATGCTTATGGTGTCGTTCTTTTTGAGCTTATATCTGGAAAGGAGGCAATTATACGAACTGAGGGAACAACTATGAAAAATCCTGAAAGACGTTCACTGGCATCCATTATGTTAGCTGTTCTTCGGAATGCACCTGATCCTATGAATATGGCAAGTCTAAAAGATCAAGTTGATCCAAGTATGATGGATTTGTATCCTCATGACTGTCTATTTAAGGTGGCCATGTTGGCAAAGCAGTGTGTGGATGAGGATTCAATCTTACGACCCGACATGAAGCAAGTCGTAATATCCTTATCACAGATCCTACTCTCTTCGATTGAGTGGGAAGCGACTCTAGCTGCAGCAGCAGCAGCCACCCCTCGAATGCATTCGGTAAAGTCATTGTCTTTTAAGCGGTTGAAGAAGGGGATGCTACCGGCGGCGATCAAGATGCCGCTCAGGGGAAAATCTGGGAAGAAGCCATTGACCGACGTTTCCAACCAGAAATACACCCGAACTTCCTCCAAATCTGTCACTAAAGCCAACACAAAGGAAGATGTTAACAGGTTTAAGGTTGAAGAGCAAGATGATTTTCTCGATCGCCTCCTTCTAGTTCAGTCCGATCTCTCCGCCCTCACTCACCAGATCGATGAACTCGTTGTGAAAGCATTTGAACTGAAGGAAATGGACAAACAAGGGAGGAAAGAGATCGAATCTTTCAGTCATGTCTTATCTGATATGCTGTCTTCTTTGAAGCCCTGGGTTCCCAGGTTGCAGAAGGTGTTCTCTCATCCATCAAAAGATTCTGATGATGGTCTAGGACAATCGTTGGCTAGTGAAAGCAATACTTTGGTTAATGATATGGAAAACAACGTTGTTGATAGCCCAGACCATGCTGAAGCTCAAGATCTGATCTCTCCTTCACCCCTAGTATCATGGCGTGCTGGATGCAATATAGAGAGAGGAAGACAATTGTTTCTACTCACACCTCTTCCTATTTCTAAATCACTCTCATCGAAACATGTGGCATATTCTAAATCTGTTCTTACCGGAATGAATTCGGGTATAGTCAAGGGTACACAGCCATGTTTTATTTCTTGTGGAGATTTAAATGAGAATACGCTTGAAGGCAATGGAATTGAGCCTGGTGTTGGGAAGCCTTCTGGGTCTGATTTAACAACACTGGGGGAGAATCTGCTTGAATGCAATGGGATTGAGGTTGGTGTTGGTAAGCCATCTGGGTCTGATTTGACCAAACTGGGGGATAATTTGCTAGAAGGTAATGCACTTGAGCCTAGTGGTGCTGAGCCTTCTGGGTGTGATTGGACGACTCATCAGCGTGGATTTGCTTCCCCCCCATTGTTATCAAAGAAGAACTGCTCTATGTTAATTATGACACCATGCTTTAAAATGTCACCGCCAAAATCTTGTGTGCTGCTTGAACCCATTTCAGAGTCATCACAAAAAGATAAAAAAAGGCTATACAAGGCCACGCCTTTTCCTGTTGGAGTTAATGATTACTCATCTGGCAGTGACGCTTCTGATGAGTTGCCTTTAAAGTATCCAGAACTCTTAGGAATTCAACAGGCTCACAAATCAGGAATTAGAAAGAAGGTTGAAGCCTCACCAGACTGGTTTCTGTCACCTCCAAAAACATGTGTTTTACTGGACCCGTCTGATTCTCATTCGGTGGAAAGTGGTACTTGTGATGGATGTCACAAAGCTAATAAATCTTTCAGCCACCAAGATCCAGTTGCGGTGAGCTTGCCGCAAATAGATAACACTCCCATGTTGAAGGAATGTGAAAGTGTATTCCGGGTTGGCAAACGTGCTGGGGAGGAAACTCTTAAGAAAGAACTGTGGGTGAAATTTGAAGCAGCCTCAGGCAATCCATTTCGTTGTGATCAAGCTCTTGACAAGACATCAAAGAAAGGCTTCCTGGACTTGTTGGATGAGGGGCCAGGAGAAAGAATCTATGAAGCTGTACTCAGAGCGAAGGAAGCTAAAACTTGTAATGATGCTGGAAGCAAATATGCTCAAGAGAATGCCTCTGTCTAG 3669 43.36 MFWSMNPVRIRSLFFLLYFAVLLQDHSLCSSYPTPLNCTDTTRLCTSFLAFKPQPNQTLSVIQSMFDVLPEDVTVEGNGQDYVFIRKNCSCASGLKKYITNTTFTIKSNHGHVYDIVMEAYDGLALLPNTTRMARNGAVVSLRLFCACSSGLWNYLMSYVMRDGDTIESLASRFGVSMDSIESVNGIENPGNVTVGALYYVPLNSVPGDPYPLETDIYPAPTPAPSYTQNNFSDNAQNPKRHPPYIWIVGSLGIILVLILVGIVGYACFRWLKCFSRSRSSHSKDPGGKVSHKFHILGKSSFCCASGRYICCSSADWKQANGESTDNQSAIPKAIESNVFDVDKPVVFSCEEIFSSTDSFSDSSLLGHGTYGSVYYGILRDQEVAIKRMTATKTKEFMAEMKVLCKVHHANLVELIGYAASEEELFLIYEYAQKGPLKNHLHDPLNKGHTPLSWIMRLQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDGSFRAKISDFGLAKLVGKTNEGEATVTKVVGTYGYLAPEYLSNGLATTKSDVYAYGVVLFELISGKEAIIRTEGTTMKNPERRSLASIMLAVLRNAPDPMNMASLKDQVDPSMMDLYPHDCLFKVAMLAKQCVDEDSILRPDMKQVVISLSQILLSSIEWEATLAAAAAATPRMHSVKSLSFKRLKKGMLPAAIKMPLRGKSGKKPLTDVSNQKYTRTSSKSVTKANTKEDVNRFKVEEQDDFLDRLLLVQSDLSALTHQIDELVVKAFELKEMDKQGRKEIESFSHVLSDMLSSLKPWVPRLQKVFSHPSKDSDDGLGQSLASESNTLVNDMENNVVDSPDHAEAQDLISPSPLVSWRAGCNIERGRQLFLLTPLPISKSLSSKHVAYSKSVLTGMNSGIVKGTQPCFISCGDLNENTLEGNGIEPGVGKPSGSDLTTLGENLLECNGIEVGVGKPSGSDLTKLGDNLLEGNALEPSGAEPSGCDWTTHQRGFASPPLLSKKNCSMLIMTPCFKMSPPKSCVLLEPISESSQKDKKRLYKATPFPVGVNDYSSGSDASDELPLKYPELLGIQQAHKSGIRKKVEASPDWFLSPPKTCVLLDPSDSHSVESGTCDGCHKANKSFSHQDPVAVSLPQIDNTPMLKECESVFRVGKRAGEETLKKELWVKFEAASGNPFRCDQALDKTSKKGFLDLLDEGPGERIYEAVLRAKEAKTCNDAGSKYAQENASV 1222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28186903 28195982 - CcPI632755_07g014100.1 Cco07g1410 184063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1410 1222 SUPERFAMILY LysM domain 157 202 IPR036779 -
Cco07g1410 1222 SMART serkin_6 360 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1410 1222 Gene3D LysM domain 156 202 IPR036779 -
Cco07g1410 1222 ProSiteProfiles LysM domain profile. 157 201 IPR018392 -
Cco07g1410 1222 Gene3D Phosphorylase Kinase; domain 1 332 431 - -
Cco07g1410 1222 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1410 1222 Pfam LysM domain 162 196 IPR018392 -
Cco07g1410 1222 FunFam PTI1-like tyrosine-protein kinase 3 432 656 - -
Cco07g1410 1222 Gene3D Transferase(Phosphotransferase) domain 1 433 657 - -
Cco07g1410 1222 ProSitePatterns Protein kinases ATP-binding region signature. 366 387 IPR017441 GO:0005524(InterPro)
Cco07g1410 1222 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 28 657 IPR044812 GO:0019199(InterPro)|GO:0045087(InterPro)
Cco07g1410 1222 ProSiteProfiles Protein kinase domain profile. 360 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1410 1222 SMART LysM_2 158 202 IPR018392 -
Cco07g1410 1222 Pfam Protein tyrosine and serine/threonine kinase 365 640 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1410 1222 FunFam Kinase family protein 335 431 - -
Cco07g1410 1222 SUPERFAMILY Protein kinase-like (PK-like) 342 642 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2371 Cco-Chr5:32236371 Cco07g1410 Cco-Chr7:28186903 5.90E-38 dispersed
Cco05g2831 Cco-Chr5:35973086 Cco07g1410 Cco-Chr7:28186903 1.10E-93 dispersed
Cco07g1410 Cco-Chr7:28186903 Cco05g2590 Cco-Chr5:34157701 5.20E-55 dispersed
Cco07g1410 Cco-Chr7:28186903 Cco02g0224 Cco-Chr2:2104780 1.60E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86984 PF07714 PK_Tyr_Ser-Thr 4.70E-48 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1410 - - - 0.0