Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1416 ATGTCGTGGCAATCTTACATTGATGATCAGTTGATGTATGAGGTCGATGGCCAACATCTCAAAGCCGCTGCTATAATCGGTAACGACGGTTCTATTTGGGCTCAGAGCACCGGTTTCCCTCAGTACAAGCCAGAAGAGATTACTGCCATTATGAAGGATTTTGATGAGCCTGGATCTCTTGCCCCGACTGGATTGCACCTTGGCGGATCGAAGTACATGGTTATCCAGGGGGAATCTGGAGCTGTTATCCGTGGAAAGAAGGGCACTTCTGGGATCACTGTAAAGAAAACAAACCAAGCACTGATTTTTGGTTTATATGATGAACCCATGACTCCAGGACAGTGCAACATGATTGTTGAGAAGTTGGGAGATTACCTGATTGATCAAGGCCTGTAG 396 46.21 MSWQSYIDDQLMYEVDGQHLKAAAIIGNDGSIWAQSTGFPQYKPEEITAIMKDFDEPGSLAPTGLHLGGSKYMVIQGESGAVIRGKKGTSGITVKKTNQALIFGLYDEPMTPGQCNMIVEKLGDYLIDQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28277382 28278888 - CcPI632755_07g014160.1 Cco07g1416 184069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1416 131 CDD PROF 2 130 IPR005455 GO:0003779(InterPro)
Cco07g1416 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Cco07g1416 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Cco07g1416 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779(InterPro)
Cco07g1416 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Cco07g1416 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Cco07g1416 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Cco07g1416 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Cco07g1416 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Cco07g1416 131 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
Cco07g1416 131 FunFam Profilin 1 131 - -
Cco07g1416 131 Pfam Profilin 1 131 IPR048278 GO:0003779(InterPro)
Cco07g1416 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Cco07g1416 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Cco07g1416 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Cco07g1416 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779(InterPro)
Cco07g1416 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Cco07g1416 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Cco07g1416 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Cco07g1416 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Cco07g1416 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1416 Cco-Chr7:28277382 Cco11g1554 Cco-Chr11:28424415 4.40E-53 dispersed
Cco11g0226 Cco-Chr11:2202593 Cco07g1416 Cco-Chr7:28277382 1.70E-60 wgd
Cco07g1416 Cco-Chr7:28277382 Cco09g0025 Cco-Chr9:216838 2.30E-57 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1416 K05759 - csv:101218089 260.766