Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1424 ATGGCAACTCTCCAATTCTTCCTTCTCATTTTTCTTTCCAGTTTCGCTCTCTTTCATTTCGTCTCTGCAGAGAATCCTTCAGGTTTCATCAGTTTAGACTGTGGACTTCCGGCGAACTCCACATACACAGAGCCAAACACCGGAATAATCTACGAATCCGATGCAGCGTTCATAAATTCTGGTGAAATCCACAACGTTTCCGCTGATAACATAAAGAATGGCTTGAAACAGCCGATGTGGAGTCTGAGGAGCTTTCCGGAAGGAATTAGGAATTGTTACAAATTGAAAGTGAGGAACGGGACGAAGTATTTGATTCGAGCGGCTTTTTGGTACGGAAATTACGATGGTAAAAGGAATTCGCCTGGATTTGATCTGTATTTCGGAGCAAATTTTTGGGACTCGGTTGCATTTGAAGGAAATTTTACAGTGAGGAAGGAGATTGTGCATATAGTTTCATCAAGTGATGTGCAAATTTGTGTCGTGAATGTTGGAACTGGAATTCCATTCATTTCGGCTCTGGAATTGAGGCCTCTAAAAGACTCTGTTTACGAGACTGGATCTCTGACATTAGCTAATTTCCTACGCCTCGATTTCGGCTCCCTTGATAATCAAACTATCAGGTATCAAGACGACGTCTACGATCGAATCTGGGATCCACCAGTTCCCATTCGAGGATGGACAACCTTAAACACTTCGGAGAAAGTTTCCGTGGACGATCCGCTCTTCTTCCAACCGGCTCCGGCGGTCATGAACACGGCGGCGACACCGAGTAACGAAAGCGCTCCGATGGCGTTCACTTGGCTGCCACCGGATTCGACGACGGCGTTTTTCGTGTACATGTACTTTGCGGAGCTGAAGGTGCTTGGAGCGAATGAGTCGAGAGTGTTCGACGTATTTCTGAACGGAAAACGATGGATTAATGAATCGCTTTCTCCCAGCTATTTAGCGGAATTGGCGTTTTACAGTACCACGCCTCTGACCGGCGGAACCTACCAGATCTCCTTTGTCAGAACTCCCAATTCAACTCTTCCTCCCATTCTCAATGCCCTTGAGATTTATCGAGTTCTTAATTTATCGCTATCCGAGACCAGTGGGCAAGATGTTGTCGCCATTGAAAACATCAAGGCAATTTATGGAGTTAAAAGAAACTGGCAAGGAGATCCCTGTGCCCCAAAGGACTTCATTTGGGAAGGACTCAACTGTAGCTTTTTGAATTCTGAGCCTCCCAGAATCATATCCTTGGATTTGTCCTCAAGTGGACTGACAGGGGAAATACCTCGAGAGATAGCAAATCTTAAAATGCTGGAGTCTTTAGATCTATCAAACAATAATTTGAGTGGACCAGTGCCTGATTTTCTCACTCAATTGCCATCCTTGCGAGTTCTAAACTTGGAAAGAAACAAGCTTTCAGGACTAATTCCGGCCCAGCTCGTAGAGAAGTCCAATAATGGCTCTCTGACATTAAGATTTGGTGATAATCCAAATCTGTTTACTACGCCTGAAAGGAGAAAGAAGCAAAGCAATGTTGTTGTTCCTGTAGTAGCATCAGTTGTTGCATTTCTTCTGCTTTCGTTCTTAATTGCAGCGGCTATCTTTTGGAAGACAAAAAGAAGAAAATCAAAAGGAGCCGAAATTAGAGTGGTGAAACAAACTGTTGATCAATCTCAAAATTGGGACACAGCCAAGAGATGTTATTCATACTCAGATGTCCTAAGAATGACAAACAATTTCGAGCGCATGCTTGGAGAAGGCGGATTTGGAAGAGTTTACTATGGAAAAATTGAGAACGCTGAAGTAGCTGTAAAAATGCTATCTCCTCAATCAGTTCAAGGCTATCAACAATTTCAAGCAGAGGTTGAGCTTCTTATGAGGGTTCACCATAGAAACTTGACTGGTCTTGTTGGGTATTGCAATGAACCAGCCTACAAAGGACTTATCTACGAGTACATGGCCAGAGGGAACTTAGGATCTCTCATGTCAGATGGCAAGTCAGCTTTGTTGAACTGGGAAGTCAGACTTCATATAGCAGTGGATGCAGCACAAGGATTGCAATACTTGCATTCTGGTATAAAGCCAGCTATTGTACATAGAGATGTAAAATCTTCCAACATCTTATTGGATGACAACTTTCAAGCAAAAGTATCTGATTTTGGCTTGTCGAGAATTTTTCCTGTCGACGATGGTGCCACTCATGTGACAACCAATGTGGTTGGCACTCCTGGTTACCTCGACCCTGAATACTACACATCTTATAGATTAAACGAAAAAAGCGACGTGTATGGCTTCGGAATTGTTCTTCTAGAAATCATAACTGGGAGACCAGTTTTGACAAAGACTCAAGACAAGGTAACTCACATCTATCAATGGGTCGACTCAATGGTTTCTCAAGGTGATATCAGCTCCATCATCGATCCGAAATTGAAAGAAGATTTCGAGGTGAACACCATTTGGAAGGCGGTTGAAATAGCGATGTCGTGCGCATCTCCCATGTCTACAAATAGGCCAACTATGAGCCAAGTTGTGATACAATTGAATGAATGTTTGAATATGGAGTTAGCTCACAGTAATAACAATCATCAACCTGAATCTGTAGTTGAAGATCATGTTTCTCTGTTTGGTCCAGAAGCAAGGTAG 2634 43.01 MATLQFFLLIFLSSFALFHFVSAENPSGFISLDCGLPANSTYTEPNTGIIYESDAAFINSGEIHNVSADNIKNGLKQPMWSLRSFPEGIRNCYKLKVRNGTKYLIRAAFWYGNYDGKRNSPGFDLYFGANFWDSVAFEGNFTVRKEIVHIVSSSDVQICVVNVGTGIPFISALELRPLKDSVYETGSLTLANFLRLDFGSLDNQTIRYQDDVYDRIWDPPVPIRGWTTLNTSEKVSVDDPLFFQPAPAVMNTAATPSNESAPMAFTWLPPDSTTAFFVYMYFAELKVLGANESRVFDVFLNGKRWINESLSPSYLAELAFYSTTPLTGGTYQISFVRTPNSTLPPILNALEIYRVLNLSLSETSGQDVVAIENIKAIYGVKRNWQGDPCAPKDFIWEGLNCSFLNSEPPRIISLDLSSSGLTGEIPREIANLKMLESLDLSNNNLSGPVPDFLTQLPSLRVLNLERNKLSGLIPAQLVEKSNNGSLTLRFGDNPNLFTTPERRKKQSNVVVPVVASVVAFLLLSFLIAAAIFWKTKRRKSKGAEIRVVKQTVDQSQNWDTAKRCYSYSDVLRMTNNFERMLGEGGFGRVYYGKIENAEVAVKMLSPQSVQGYQQFQAEVELLMRVHHRNLTGLVGYCNEPAYKGLIYEYMARGNLGSLMSDGKSALLNWEVRLHIAVDAAQGLQYLHSGIKPAIVHRDVKSSNILLDDNFQAKVSDFGLSRIFPVDDGATHVTTNVVGTPGYLDPEYYTSYRLNEKSDVYGFGIVLLEIITGRPVLTKTQDKVTHIYQWVDSMVSQGDISSIIDPKLKEDFEVNTIWKAVEIAMSCASPMSTNRPTMSQVVIQLNECLNMELAHSNNNHQPESVVEDHVSLFGPEAR 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28336799 28343357 + CcPI632755_07g014240.1 Cco07g1424 184077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1424 877 Gene3D Ribonuclease Inhibitor 369 488 IPR032675 -
Cco07g1424 877 Pfam Malectin-like domain 32 355 IPR024788 -
Cco07g1424 877 PANTHER OS07G0107800 PROTEIN-RELATED 23 852 - -
Cco07g1424 877 ProSitePatterns Protein kinases ATP-binding region signature. 581 602 IPR017441 GO:0005524(InterPro)
Cco07g1424 877 Gene3D Phosphorylase Kinase; domain 1 547 649 - -
Cco07g1424 877 SUPERFAMILY L domain-like 372 477 - -
Cco07g1424 877 Pfam Leucine rich repeat 413 469 IPR001611 GO:0005515(InterPro)
Cco07g1424 877 Gene3D Transferase(Phosphotransferase) domain 1 650 870 - -
Cco07g1424 877 FunFam Leucine-rich repeat receptor-like protein kinase 553 649 - -
Cco07g1424 877 SUPERFAMILY Protein kinase-like (PK-like) 559 844 IPR011009 -
Cco07g1424 877 FunFam Leucine-rich repeat receptor-like kinase 366 499 - -
Cco07g1424 877 ProSiteProfiles Protein kinase domain profile. 575 848 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1424 877 SMART serkin_6 575 848 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1424 877 PRINTS Leucine-rich repeat signature 435 448 - -
Cco07g1424 877 PRINTS Leucine-rich repeat signature 456 469 - -
Cco07g1424 877 Pfam Protein tyrosine and serine/threonine kinase 577 843 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1424 877 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 650 857 - -
Cco07g1424 877 ProSitePatterns Serine/Threonine protein kinases active-site signature. 694 706 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1424 Cco-Chr7:28336799 Cco09g0035 Cco-Chr9:315591 2.70E-215 dispersed
Cco07g1423 Cco-Chr7:28329305 Cco07g1424 Cco-Chr7:28336799 1.80E-08 tandem
Cco07g1424 Cco-Chr7:28336799 Cco07g1425 Cco-Chr7:28348019 1.40E-214 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86985 PF12819 Malectin_like 4.40E-111 CL0202 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1424 - - - 0.0