Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1425 ATGGGAGCCTTACTATTCAACGCCTTCCTTCTTGCCTTTCTCTCCACCTTTTCTCTTCTGCATTTGGTTGTTCATGCCCAAACCTCCCAAAATGGGTTCATCAGCATTGATTGTGGGGCAAATTCAAGTTATACTGAGGCAACAACTGGTATAAATTATGTTCCGGATTCAAATATGGTGGAGACTGGGATGCCAAAGACTGTAGCATCAGATTATAGATTGAGTAGTCTTCTCAAACAACTATGGACTTCAAGAAGTTTTTCTGAAGGGATAAGGAATTGCTACAACATTCCTGTGAAACTTGGGATCAAATATTTGATTCGAGCCAGTTTCTTGTATGCAAATTATGATGGCCAAAATAGTGTTCCACAATTTGATCTCTATTTTGGACCAAATTTTTGGACAACAGTAAGTCTGCCAAAGGTACAATCTATTATAGATGAGGAGATAATTCATATCACAACTTCAAATCAAGTGCAGATTTGCCTAGTTAATACAGGAAATGGAGTGCCCTTTATTTCATCGATTGAGTTAAGGCCATTGCCAAACACAACTTATGTAACACGCGGTGAATCATTGACAACATTCTTGCGGTTGGATATTGGTACTTCTCCAAATGATACTATTACCCGATTTCCAGACGACACATATGATCGTATTTGGAGTCCACCAGCTCCACTAGCCAATTGGACTCCATTAAAAACTCAACTTACCATTAACAACCAAGACGGTCCTGGGTTCATGGCACCTTCTAAAGTGTTAAGTACAGCCTCCACACTCATAAATGCAAGTGCACCAATGGAATTCTATTGGAATGATGATGATCCATCCAGCCTTTACTATGTTTATATGTATTTTGCTGAAGTTCAAGTCCTTAAAGCCAATCAATCAAGACTATTCAAAATCTATCTCAATGACAACCTTTGGATTAAAGATGATATTCTTGTTCTATATCTTACTGAAAATGTGGCTCGTAGCTTGGCTCCTTTGACAGTTAATTCTACTTATGACTTTAAATTCATCATGTCCCAAGGCTCCACTCTTCCTCCCCTTTTGAATGCCATTGAGATTTATAAAGTCATCAACTTCCTACAACTCACCACACAACAACAAGATGTTGATGCCATTGTATCCATTAAGAAATTTTATGGGGTGACAAAAAATTGGCAAGGAGATCCATGTTCCCCTAAAACCTTTTCTTGGGAAGGTCTTAACTGCAGTTATGATGTTTCAAATCCTCCTTCAATCACAGGGCTAGATTTATCATCAAGTGGATTAAATGGAGAAATCTCATCCAACATATCAAATCTTGCAAAGCTAGCGGTTTTGGATTTGTCAAATAATAGCCTAAGTGGGCCAGTACCTGATTTTCTTGCTCAAATGCCCCTGTTGACTTTTTTAAACTTATCTGGAAACAACCTATCAGGACCAATTCCTTCTTCACTTATTGCCAAAAGAGACAAAGGCTCTCTTTCATTAAGCTTGGATGGAAACCCTAATCTACAAGTGACAACCCCAAGTGAAAAGAAGAAGAATAACATAGTAGTTCCTATAGTAGCAGCAATTGGTGGTGCTATCATCATTTTGGTATTGGTCATAGTTTCAGTTTACTTCATTCGACGGAAAAAAACCCCTAAAGGTCCAGTGGAGCCCCATTCACCAATAAATTCTCAAGTTGAACTTCCTCCACATGAGCCATTGCAGTCGCCAAGTCGCCAATTTTCGTATTCAGACATCTTAAAATTTACTAATAATTTTGGTAGATTATTGGGTGAAGGTGGATTTGGAAAAGTTTATTATGGTCTCATGGGTAACACTGAAGTGGCAGTCAAAATGTTGTCTCCAAAATCAACTCAAGGATATAGAGAATTTCAAGCAGAGGTTGATCTTCTTTTGAGAGTTCATCACAGAAACTTAACCAGCCTTGTTGGATATTGCAATGAAGGGGAGACAAAAATGGGGCTTGTCTATGAATACATGGGCAAAGGAAATCTAGGATCTATTCTTTTAGGTGGAGGAGGAGAAGTTTTAAGATGGGAAGACAGACTTCAAATAGCATTGGGTTCAGCACAAGGATTGGAATATCTACATAATGGTTGCAGGCCACCAATTGTTCATAGAGACATTAAATCAAGTAACATTTTATTGAATGAGTATTTACAAGCAAAACTTGCTGATTTTGGCCTATCTAGAGCTTTTCCTATGGAAGGAGGTGCCACTCATGTGACAACCAAGGTGGTTGGAACTCCGGGATACCTTGATCCAGAGTATTATACGTCGTACAAATTGACAGAGAAGAGTGATGTTTATAGCTTTGGGATTGTGATTCTAGAACTCGTGACGGGGAGACCAGTATTAGTGAAAACGAGTGAGAAAAGTCACATTATTCAATGGGTTGATTACAACATAAACCAAGAACTTCAGATCCTCCAACCTAACCAATCAAGAACATTCAAAATCTACAATAATGGTAAGCTTCTCTATAGTCAAGATGTTTCCCCTGCCTATCTCAATGAAAATGTCGTCTATGGCCCAGCACCCTTATCTATTAGTGCAAGATATGAATTTAGTTTGATCATGTTCCAAGCCTCTCTCTTCTCCATTCTCTTCTTCAGTCCTCCTTTGGTGAACCCTTCCCCGCCTTCCCCGCCATCCCCGCCCAATGAAGAACAAAGTACCGTCGTTGTCGAACTTAGCCAGGTGAACAATGAAGGAGAAGTCAGTTTTTTCTTAAATGGTGGTCCTGGGGTTTGTTCTTTGCCTCATGATATCATCAAAAGCGACCGGTGA 2790 39.28 MGALLFNAFLLAFLSTFSLLHLVVHAQTSQNGFISIDCGANSSYTEATTGINYVPDSNMVETGMPKTVASDYRLSSLLKQLWTSRSFSEGIRNCYNIPVKLGIKYLIRASFLYANYDGQNSVPQFDLYFGPNFWTTVSLPKVQSIIDEEIIHITTSNQVQICLVNTGNGVPFISSIELRPLPNTTYVTRGESLTTFLRLDIGTSPNDTITRFPDDTYDRIWSPPAPLANWTPLKTQLTINNQDGPGFMAPSKVLSTASTLINASAPMEFYWNDDDPSSLYYVYMYFAEVQVLKANQSRLFKIYLNDNLWIKDDILVLYLTENVARSLAPLTVNSTYDFKFIMSQGSTLPPLLNAIEIYKVINFLQLTTQQQDVDAIVSIKKFYGVTKNWQGDPCSPKTFSWEGLNCSYDVSNPPSITGLDLSSSGLNGEISSNISNLAKLAVLDLSNNSLSGPVPDFLAQMPLLTFLNLSGNNLSGPIPSSLIAKRDKGSLSLSLDGNPNLQVTTPSEKKKNNIVVPIVAAIGGAIIILVLVIVSVYFIRRKKTPKGPVEPHSPINSQVELPPHEPLQSPSRQFSYSDILKFTNNFGRLLGEGGFGKVYYGLMGNTEVAVKMLSPKSTQGYREFQAEVDLLLRVHHRNLTSLVGYCNEGETKMGLVYEYMGKGNLGSILLGGGGEVLRWEDRLQIALGSAQGLEYLHNGCRPPIVHRDIKSSNILLNEYLQAKLADFGLSRAFPMEGGATHVTTKVVGTPGYLDPEYYTSYKLTEKSDVYSFGIVILELVTGRPVLVKTSEKSHIIQWVDYNINQELQILQPNQSRTFKIYNNGKLLYSQDVSPAYLNENVVYGPAPLSISARYEFSLIMFQASLFSILFFSPPLVNPSPPSPPSPPNEEQSTVVVELSQVNNEGEVSFFLNGGPGVCSLPHDIIKSDR 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28348019 28359764 + CcPI632755_07g014250.1 Cco07g1425 184078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1425 929 PANTHER OS07G0107800 PROTEIN-RELATED 27 804 - -
Cco07g1425 929 FunFam Leucine-rich repeat receptor-like protein kinase 562 659 - -
Cco07g1425 929 Pfam Protein tyrosine and serine/threonine kinase 586 799 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1425 929 SUPERFAMILY Protein kinase-like (PK-like) 560 803 IPR011009 -
Cco07g1425 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 704 716 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1425 929 Pfam Malectin-like domain 36 360 IPR024788 -
Cco07g1425 929 Gene3D Phosphorylase Kinase; domain 1 566 659 - -
Cco07g1425 929 Gene3D - 194 361 - -
Cco07g1425 929 Gene3D Transferase(Phosphotransferase) domain 1 660 827 - -
Cco07g1425 929 SMART serkin_6 584 910 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1425 929 FunFam Leucine-rich repeat receptor-like kinase 371 504 - -
Cco07g1425 929 Pfam Leucine rich repeat 415 474 IPR001611 GO:0005515(InterPro)
Cco07g1425 929 ProSitePatterns Protein kinases ATP-binding region signature. 590 611 IPR017441 GO:0005524(InterPro)
Cco07g1425 929 Gene3D Ribonuclease Inhibitor 373 502 IPR032675 -
Cco07g1425 929 SUPERFAMILY L domain-like 392 483 - -
Cco07g1425 929 MobiDBLite consensus disorder prediction 544 567 - -
Cco07g1425 929 ProSiteProfiles Protein kinase domain profile. 584 929 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1425 Cco-Chr7:28348019 Cco09g0033 Cco-Chr9:283009 3.20E-190 dispersed
Cco07g1424 Cco-Chr7:28336799 Cco07g1425 Cco-Chr7:28348019 1.40E-214 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86986 PF12819 Malectin_like 7.60E-107 CL0202 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1425 - - - 0.0