Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1440 ATGAGTCGGGAGCAGAAGCGGGGAAAGCAGGACAAAGGTTCTGATGATGTCCAGAAGGTGATTGTTGCAGTGAAGGCTTCCAAAGAAATTCCTAAAACTGCACTGGTTTGGGCGTTGACTCATGTTGTTCAAATAGGAGATTGCATAACTCTGCTGGTTGTTGTCCCTTCTCAAAGCTCTGGTAGAAAATTCTGGGGTTTTCCGAGATTTGCTGGGGATTGTGCAAGTGGTCACAAGAAAGCTCATTCTGGAACAAGCTCGGAGCTGAAATGTGATATTACTGATTCCTGTTCGCAGATGATCCTTCAGCTTCATGATGTTTATGATCCAAATAAGATAAATGTGAAAATTAAAATTGTTTCGGGGTCGCCAAGTGGGTCTGTAGCTGCTGAGGCCAAGAGAGCTCAAGCTAGCTGGGTTGTATTAGACAAACAGCTCAAACACGAGGAGAAATGTTGCATGGAAGAGTTACAGTGCAACATTGTGGTAATGAAGCGATCACAACCGAAAGTTCTTCGTTTGAACCTGGTTGGGTCTCCAAAGAAGGAACAAGAAGTGCCCTCTCCGTCACCTTCTGATATAGATGAAGGGTCTGAAAGCCATCAAAAAGAAAATAATGATCCTCTAGATTTCATACGGGGACCAGTTGTGACCCCCAGTAGCAGCCCAGAGTTGGGCACACCTTTTACCGTTACCGAAGCTGGAACATCATCAGTGTCAAGCTCAGATCCTGGAACTTCACCATTTTTTAACTCTGAAATGAATGGAGACACAAAGAAGGAGGAATTGTTTGTTATAAAGGAAAATAAAGAACTTGATGCTGCTAGTTCAGACTCGGATATTGAGAATTTATCTGTATCTTCTGCGAGTTTAAGATTCCAACCATGGATGACAGAGTTTCTAAGTTCTCATCTTCAATCCTCACAACACATAAGTGGAAGGTCACAGAGATGTGATGATATGAATCAAGTGTCAACAAGGAAATCTTTTCTACCAAAGTCTTCTAAACTTGACAGAGAATCAAGCATTGGAATGTCAAGCCATAGAAGTGACAATGATTTTCATGGAGATGTACGAGATGCAGTTTCATTATCCCGGAACACACCACCAGGCCCTCCTCCATTATGTTCAATATGCCAACACAAGGCACCAGTTTTTGGAAAGCCTCCAAGGTGGTTCAGCTATGCTGAGCTGGAGCTTGCTACTGGTGGATTTTCACAAGCCAACTTTTTGGCTGAAGGAGGATATGGATCTGTTCACAGAGGGGTACTCCCAGATGGACAGGTGGTCGCCGTGAAGCAGCACAAACTAGCTAGTTCTCAGGGAGACCTTGAATTTTGTTCAGAAGTCGAAGTTCTTAGCTGTGCACAACATCGAAACGTTGTTATGTTGATTGGCTTTTGTATAGAGGAGAAGAGAAGGTTGTTGGTGTATGAATACATCTGCAATGGTTCACTGGATTCTCATTTATATGGACGCCAACAAGAGCCACTAGAATGGTCTGCACGGCAAAAAATTGCTGTGGGAGCTGCAAGGGGGCTACGATATCTCCATGAAGAATGTAGAGTGGGTTGCATTGTTCACCGGGATATGCGGCCAAACAACATTCTTATTACCCATGATTTTGAACCACTAGTTGGAGATTTTGGCCTTGCAAGGTGGCAGCCGGACGGAGATACCGGTGTTGAAACAAGAGTTATTGGAACATTTGGGTATTTGGCTCCAGAGTATGCTCAAAGTGGCCAAATCACAGAAAAAGCGGATGTTTATTCCTTTGGGGTGGTACTGGTGGAGCTAATTACTGGAAGAAAAGCTGTAGACCTTAGTCGGCCGAAAGGTCAACAGTGTCTCACTGAATGGGCGCGCCCCTTGTTGGATGAATTTCTTATTGATGAACTGATTGATCCAAGGTTGGGAAATAACTTTGCAGAGCATGAAGTGTACTGCATGCTGCATGCCGCATCGTTGTGCATCCGAAGAGATCCCAACGCAAGGCCTCGTATGTCACAGGTTTTACGAATTTTGGAAGGGGACCTCGTCATGGACGCTAATTACTTGTCAACTCCTGGATACGATGTGGGAAATCGGAGTGGTCGGATGTGGACCGAGCAGCAGCAGCAAAACTACAGTGGCTCATTATCAGATGAGACTCTAGAGAGGTTCAATGAAAAAGTCTGTGTAGAGAGTTTAAGACCAGGTTACTGGGAAAGAGACAAGACAAGGAGGACTTCAGGTGGAAGTGATTTGTAA 2250 44.44 MSREQKRGKQDKGSDDVQKVIVAVKASKEIPKTALVWALTHVVQIGDCITLLVVVPSQSSGRKFWGFPRFAGDCASGHKKAHSGTSSELKCDITDSCSQMILQLHDVYDPNKINVKIKIVSGSPSGSVAAEAKRAQASWVVLDKQLKHEEKCCMEELQCNIVVMKRSQPKVLRLNLVGSPKKEQEVPSPSPSDIDEGSESHQKENNDPLDFIRGPVVTPSSSPELGTPFTVTEAGTSSVSSSDPGTSPFFNSEMNGDTKKEELFVIKENKELDAASSDSDIENLSVSSASLRFQPWMTEFLSSHLQSSQHISGRSQRCDDMNQVSTRKSFLPKSSKLDRESSIGMSSHRSDNDFHGDVRDAVSLSRNTPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGYGSVHRGVLPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEEKRRLLVYEYICNGSLDSHLYGRQQEPLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELITGRKAVDLSRPKGQQCLTEWARPLLDEFLIDELIDPRLGNNFAEHEVYCMLHAASLCIRRDPNARPRMSQVLRILEGDLVMDANYLSTPGYDVGNRSGRMWTEQQQQNYSGSLSDETLERFNEKVCVESLRPGYWERDKTRRTSGGSDL 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28506796 28510853 + CcPI632755_07g014400.1 Cco07g1440 184093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1440 749 Gene3D Phosphorylase Kinase; domain 1 377 480 - -
Cco07g1440 749 MobiDBLite consensus disorder prediction 329 356 - -
Cco07g1440 749 Gene3D Transferase(Phosphotransferase) domain 1 481 685 - -
Cco07g1440 749 SUPERFAMILY Protein kinase-like (PK-like) 389 685 IPR011009 -
Cco07g1440 749 FunFam Dual-specific kinase DSK1-like 11 165 - -
Cco07g1440 749 Gene3D HUPs 3 151 IPR014729 -
Cco07g1440 749 PANTHER OS01G0750732 PROTEIN 138 688 IPR050885 -
Cco07g1440 749 Pfam Protein tyrosine and serine/threonine kinase 409 673 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1440 749 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 377 480 - -
Cco07g1440 749 CDD STKc_IRAK 411 677 - -
Cco07g1440 749 ProSiteProfiles Protein kinase domain profile. 405 686 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1440 749 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 481 684 - -
Cco07g1440 749 MobiDBLite consensus disorder prediction 220 254 - -
Cco07g1440 749 ProSitePatterns Tyrosine protein kinases specific active-site signature. 526 538 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1440 749 MobiDBLite consensus disorder prediction 342 356 - -
Cco07g1440 749 MobiDBLite consensus disorder prediction 175 255 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2185 Cco-Chr5:30650028 Cco07g1440 Cco-Chr7:28506796 1.70E-162 dispersed
Cco07g1440 Cco-Chr7:28506796 Cco11g0264 Cco-Chr11:2575393 1.90E-87 dispersed
Cco02g0028 Cco-Chr2:366553 Cco07g1440 Cco-Chr7:28506796 3.20E-68 transposed
Cco08g0743 Cco-Chr8:19086317 Cco07g1440 Cco-Chr7:28506796 1.90E-68 transposed
Cco08g0770 Cco-Chr8:19500081 Cco07g1440 Cco-Chr7:28506796 4.80E-87 transposed
Cco11g1346 Cco-Chr11:26276789 Cco07g1440 Cco-Chr7:28506796 1.80E-80 transposed
Cco03g1625 Cco-Chr3:30937058 Cco07g1440 Cco-Chr7:28506796 1.60E-228 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86987 PF07714 PK_Tyr_Ser-Thr 1.20E-40 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1440 - - - 0.0