Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1442 ATGGCAGTGGAGGGAAAGCAGAAGTTCTTCCATGGAACGCTTGAAGTTACCATCTTCCATGCAACGGCTTACACCCCGCCATCACCTTTGGATTGCATATTTGCTGGAGGAAAGCGCAGCTATGTGACCATCAAGATAGACAACAAGGAGGTTGCCCAGACAAGCCATGAACATGACCGTGTTTGGAACCAGACATTCCAAGTTCTATGTGCACATCCATTGACTTCTACCGTCACCATTACAATGAAAACATCTCGTTCTGTCTTGGGTAAATTCTACATCCAAGCCCAACAGATTTTGAAAGAAGCAAGTTTTATCAATGGTTTCTTTCCACTTCTTATGGAAAATGGGAAGATGAGTCCGGAGCTCAAACTTCGATTCATGCTATGGTTTAAACCAGCAGTATATGAATTAAGCTGGAAAAAGATGCTGGGAAATGGAGAATACAAGGGGCTGAGAAATGCAACATTTCCTTTAAGGTCCAACTGTCATGTTACTCTGTATCAAGATGCTCACCACCTCCCTACTTTTCAACCTCCATTTCATGGTTCAAGTACACCAAAAAGGCTATGGGAAGATGTATACAAGGCCATAGATAATGCAAAGCATTTGGTTTACATTGCAGGCTGGTCCTTCAATCCAAAGATGGTGCTGGTAAGGGACTCTCAGACAGATATACCCTATGCTTTAGGAGTAACGCTTGGAGAGTTGTTGAAGCAGAAGGCAGAAGAAGGAGTAGCTGTGAGAATATTGATTTGGGATGATGAAACATCCCTTCCTATCATCAAGAATGCTGGGATAATGAACACACATGATGAAGATGCTTGCGCATATTTCTTGCACTCAAAAGTCATATGTAGATTGTGCCCCAAATTACATCCTATGTCTCCCCCAATTTTCTCTCATCATCAGAAAACCATAATCGCAGATGCTCAAACTCACATCAATGCACGAAACAGGGAGATTATGAGTTTCATTGGGGGTTTAGATCTTTGTGATGGTCGCTACGATACAGAACAACACTCACTGTTTCATACTCTGAACACAGAATCCCACTGTTGTGATTTCTATCAGACGAGTATATCAGGTGCCAAACTTCAAAAAGGAGGGCCAAGAGAGCCATGGCATGATGTTCACGCTTGTGTAACAGGTGAAGCTGCATGGGATATATTAACAAACTTTGAGCAACGATGGACTAAGCAATCAGATGCTTCGTTGTTAGTACCGACAAGCATCTTATCAAAATTGATGCCCCAGCTCGAATCGAACACAAACCCACAAAAGGATTGGAATGTGCAAGTTTTTCGATCAATTGACTATTTGTCTGCTGGCCAAATGTTCAGAAACATGACCATTGAACGAACCATCCATGAAGCTTACGTTGAAGCTATCAGGCGAGCCGAGAGATTTATTTACATTGAAAACCAATATTTTATAGGAGGGTGTCACTTGTGGGACAAAGATCAACATTGTGGATGCACGAATTTGATACCGATTGAGATTGCGCTCAAGGTGGCTAATAAGATTAAGGCAAGGGAGAGGTTTGCAGTTTACATAGTGATTCCAATGTGGCCAGAAGGACCTCCAGAGAGTGAATCAGTTGAGGATATGCTACACTGGACAAGGCAGACAATGACAATGATGTATAGACTGATTGGAGAAGCAATCCAAGAAACTGGGGAAAAGGCCCATCCAAGAGATTACCTGAATTTCTTTTGCCTTGCAAACAGAGAGGAAGAGGGAAAGTGGGACTTTGTTCCCCCGCACAGTCCCCAACATGCAACACAGTACTGGAATGCCCAACAACATAGGAGGTTCATGATCTATGTCCATTCCAAGGTCATGATAGTGGACGATTTGTACATTCTGATTGGATCCGCAAACGTAAACCAGAGATCCATGGACGGAGAGAGAGATACAGAGATAGCAATCGGATGCTACCAAATAGAAAATGATGGAGAAGAGTTACCAAATGGAAGAGACATTTCAACATTCCGATTGTCGCTTTGGTACGAACATACACGAAGATTCGAAGAACTGTTCTTAAACCCCGAAAGCTTGCAATGCGTTCAAAGGGTTTGTTCAATAGGAGATAAATCATGGAAAATTTACAGTGGAGAAGAAGTTGAAGACATGAAAGGGGTTCATCTGGTAACGTACCCTGTGAAGGTGAAAGAGGATGGGTCGATGGAGGATTTGGAAGAAAATGGAGGCCATTTTCCTGATACCAAATGCCCCATTAAAGGAAGAAGATCAAAGATGTTGCCGCCCATTTTCACAACCTAG 2286 42.65 MAVEGKQKFFHGTLEVTIFHATAYTPPSPLDCIFAGGKRSYVTIKIDNKEVAQTSHEHDRVWNQTFQVLCAHPLTSTVTITMKTSRSVLGKFYIQAQQILKEASFINGFFPLLMENGKMSPELKLRFMLWFKPAVYELSWKKMLGNGEYKGLRNATFPLRSNCHVTLYQDAHHLPTFQPPFHGSSTPKRLWEDVYKAIDNAKHLVYIAGWSFNPKMVLVRDSQTDIPYALGVTLGELLKQKAEEGVAVRILIWDDETSLPIIKNAGIMNTHDEDACAYFLHSKVICRLCPKLHPMSPPIFSHHQKTIIADAQTHINARNREIMSFIGGLDLCDGRYDTEQHSLFHTLNTESHCCDFYQTSISGAKLQKGGPREPWHDVHACVTGEAAWDILTNFEQRWTKQSDASLLVPTSILSKLMPQLESNTNPQKDWNVQVFRSIDYLSAGQMFRNMTIERTIHEAYVEAIRRAERFIYIENQYFIGGCHLWDKDQHCGCTNLIPIEIALKVANKIKARERFAVYIVIPMWPEGPPESESVEDMLHWTRQTMTMMYRLIGEAIQETGEKAHPRDYLNFFCLANREEEGKWDFVPPHSPQHATQYWNAQQHRRFMIYVHSKVMIVDDLYILIGSANVNQRSMDGERDTEIAIGCYQIENDGEELPNGRDISTFRLSLWYEHTRRFEELFLNPESLQCVQRVCSIGDKSWKIYSGEEVEDMKGVHLVTYPVKVKEDGSMEDLEENGGHFPDTKCPIKGRRSKMLPPIFTT 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28524465 28527235 + CcPI632755_07g014420.1 Cco07g1442 184095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1442 761 PIRSF PLD_plant 2 761 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Cco07g1442 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 298 335 IPR001736 GO:0003824(InterPro)
Cco07g1442 761 Pfam C2 domain 12 108 IPR000008 -
Cco07g1442 761 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 9 124 IPR035892 -
Cco07g1442 761 SMART pld_4 300 335 IPR001736 GO:0003824(InterPro)
Cco07g1442 761 SMART pld_4 606 633 IPR001736 GO:0003824(InterPro)
Cco07g1442 761 Gene3D Endonuclease Chain A 447 651 - -
Cco07g1442 761 Gene3D C2 domain 2 131 IPR035892 -
Cco07g1442 761 PANTHER PHOSPHOLIPASE D 38 744 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Cco07g1442 761 Pfam Phospholipase D Active site motif 608 633 IPR001736 GO:0003824(InterPro)
Cco07g1442 761 SUPERFAMILY Phospholipase D/nuclease 424 690 - -
Cco07g1442 761 SUPERFAMILY Phospholipase D/nuclease 144 409 - -
Cco07g1442 761 Gene3D Endonuclease Chain A 173 432 - -
Cco07g1442 761 Pfam Phospholipase D C terminal 678 750 IPR024632 -
Cco07g1442 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 606 633 IPR001736 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1442 Cco-Chr7:28524465 Cco09g0271 Cco-Chr9:2413920 2.70E-171 dispersed
Cco07g1442 Cco-Chr7:28524465 Cco07g1343 Cco-Chr7:27531667 1.70E-173 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1442 K01115 - csv:101206396 1511.89