Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1464 ATGATGGAAGAGATGTCTCCTGCTGTTTCTTTGACCCTTAGTTTGGGTAATCCAAAGTCTGATAGCTCAGTAAATCCTGGTCATGTCGAATTCACACGGCTAAAGTTAGTGACAGACACAGTAAATTTATTCTCTGCATCGTCCCCTGAGTCGGGTTCTATTGGTAATGGTAGTTGCCATGATTTTAATGGTATAGTCGACAGCATAACTGTGTCACAACCGACTGATAATGGTCAAGGTATCGACAGTTTTTGGGGGTTGTTACCTAAGAATGGCACGAAGTTGACCGTAGATAAGGAAGATGCATCCTTAGCTACTCTCGATGACCCTGATGAAATGATAGACGATGGGTTGTTTGCTATTGATGGCGGTTCAAATATTAATGTGCAAGAAGTTGTCAAAATTGGAGATGTTGCTAATGGTCATATTGTTGCAAAGGCTATCATCTTGGTGGAATCAGGGAAGATGCCTACTAGTGAACTTATTGTGGCGACAGTAAGCCCAGATTTAGAAGTATCTGCATCTTCAGAGCTAAACGTCCCTGCAGTAGTTTTCCAATCGAAAGGGGGGGATAGCGTTCATAAAGGCATTCGTAGTGTCTTTGAACGCGATTGTATCCCCCTTTGGGGGTCCGTATCAATTTGCGGTAGAAGACCAGAAATGGAAGATGCAATTGCTGCCGTTCCTTGTTTTGCAAAGATTCCTATCAAAATGCTTGTAGGAAATGGTATGCTGAATGGAATGGGTCAAAGTTTAACACATCTCAACAGCCATTTTTTTGGTGTTTATGATGGACATGGGGGCCCTCAGGTTGCTGATTATTGTCGAGAGCGTATACACTTGGCACTAGCTGAAGAGATAAGCGGATTCAAACAAAATCAAAATAATGGAAGCAATGGAGAAAACTGGCAGCAGGATTGGGAGAGAACCTTTTACAATTGTTTTCTTAGGGTTGATGATGAAATAGAAGGGAAAGTTGGTAGAACAGTCAGTGGGAGTGGTGGAGATGTTTCCGATACAAGCTTCGAGCCTGTTGCCCTGGAAACTGTTGGCTCTACGGCTGTTGTTGCCTTGGTCTGTTCATCACACATCATAGTTGCAAACTGTGGTGATTCAAGAGCAGTCCTATGCCGTGGTAAAGAACCCATGGCTCTATCGGTTGATCACAAACCAAATCGCGAAGATGAATTCGCTAGGATTGAATCATCTGGAGGCAAGGTCATCCAGTGGAATGGACATCGCGTGTTTGGAGTTCTTGCAATGTCAAGATCCATTGGTGATAGATATTTGAAGCCATGGATTATTCCTGATCCAGAAGTCATGGTCGTTCCTCGTGCGAAAGAAGACGAATGTCTTATTTTAGCCAGTGATGGACTGTGGGATGTGATGACAAATGAGGAAGTCTGCGAAATAGCTCGAAGGCGGATTCTGCTTTGGCACAAGAAACACGGGGCTTCGTCTCTTGCCGATCGGGGCACAGGAGTTGACCCAGCTGCTCAAGCTGCAGCAGATTACCTCTCAATGCTTGCTCTCCAAAAGGGAAGCAAAGACAACATCTCTGTCATTGTAGTGGACTTGAAAGCTCAAAGGAAGTTCAAGACCAAATCTTGA 1611 44.13 MMEEMSPAVSLTLSLGNPKSDSSVNPGHVEFTRLKLVTDTVNLFSASSPESGSIGNGSCHDFNGIVDSITVSQPTDNGQGIDSFWGLLPKNGTKLTVDKEDASLATLDDPDEMIDDGLFAIDGGSNINVQEVVKIGDVANGHIVAKAIILVESGKMPTSELIVATVSPDLEVSASSELNVPAVVFQSKGGDSVHKGIRSVFERDCIPLWGSVSICGRRPEMEDAIAAVPCFAKIPIKMLVGNGMLNGMGQSLTHLNSHFFGVYDGHGGPQVADYCRERIHLALAEEISGFKQNQNNGSNGENWQQDWERTFYNCFLRVDDEIEGKVGRTVSGSGGDVSDTSFEPVALETVGSTAVVALVCSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEFARIESSGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMVVPRAKEDECLILASDGLWDVMTNEEVCEIARRRILLWHKKHGASSLADRGTGVDPAAQAAADYLSMLALQKGSKDNISVIVVDLKAQRKFKTKS 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28756270 28758439 - CcPI632755_07g014640.1 Cco07g1464 184117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1464 536 SMART PP2C_4 198 524 IPR001932 -
Cco07g1464 536 CDD PP2Cc 210 526 IPR001932 -
Cco07g1464 536 ProSitePatterns PPM-type phosphatase domain signature. 259 267 IPR000222 GO:0043169(InterPro)
Cco07g1464 536 Pfam Protein phosphatase 2C 236 519 IPR001932 -
Cco07g1464 536 Gene3D - 195 536 IPR036457 -
Cco07g1464 536 PANTHER PROTEIN PHOSPHATASE 181 525 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco07g1464 536 MobiDBLite consensus disorder prediction 10 24 - -
Cco07g1464 536 FunFam Protein phosphatase 2C 16 196 536 - -
Cco07g1464 536 ProSiteProfiles PPM-type phosphatase domain profile. 208 526 IPR001932 -
Cco07g1464 536 MobiDBLite consensus disorder prediction 1 24 - -
Cco07g1464 536 SUPERFAMILY PP2C-like 200 527 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1675 Cco-Chr3:31391918 Cco07g1464 Cco-Chr7:28756270 3.00E-73 dispersed
Cco05g0917 Cco-Chr5:7929035 Cco07g1464 Cco-Chr7:28756270 1.50E-62 dispersed
Cco05g1048 Cco-Chr5:9269419 Cco07g1464 Cco-Chr7:28756270 7.20E-56 dispersed
Cco07g1464 Cco-Chr7:28756270 Cco08g1153 Cco-Chr8:23347531 9.30E-142 dispersed
Cco07g1464 Cco-Chr7:28756270 Cco03g0125 Cco-Chr3:1230429 3.00E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1464 K14497 - csv:101203499 998.423