Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g1466 | ATGGGAAACCAGAAGCAAAAGTGGACGTCAGAGGAGGAAGACGCACTTTTGGCGGGCGTCAATAAGCACGGTCCTGGAAAGTGGAAGAACATTCTCAAGGATCCTGATTTCGCTCCGTCTCTCACTCATCGCTCTAACATTGACCTCAAGTCTAGTGGACCCCAAGTAACTGTGGCCTTGGATGAACTGTATAAGATCTTCTTCGAGTCTGTTCCTAGATGCATCTTTGAGATTGCTTATGTTCCAGTATTACTTGAAACAATGATGACATGTGACAAATGGCGTAATTTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGATTCCTAAAGCAAAAGCTATCGTTGCTGCTATTTCTAACAACCAAAGCTCTGCTCCTGCTAAGCTTATTGCAGCTGCTGATACTGCAGGGGATGATACACCAAACAACAGCACACAAGATGGGAAAAATGTCCCAAGGTATTATTCAATGATTTTTGAAGCCCTTTCAACTATAAAAGATTCTAATGGATGTGACATAGGTACAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGAAGGCTTGTTTCACAAGGGAAGCTTGAAAAGGTTCAAAATTGCTACAAGGTGAAGAAAGACAATTCGTTGGCAGTTAAAACTCCTACTCCCAAACAAAAAGATGTCAGGCAACGGATATCGCAACAGACTATGGGAGTGGTGATGCCATCAGGGGAGACAGTGGAAGATGCAGCGAAAGCGGCTGCCTACAAAGTTGCTGATGCAGAGAACAAATCCTTCTTAGCTGCTGAAGCTGTGAAGGAGGCAGAGAGAATTGCAAAGATGGCCGAAGATACAGATTCGATGCTACAGATTATAAAAGAGATAAACTTGACTAACTTGGCTAAGCTTTCCTGTAATGCCTTTCGGGAGGTGGATGATGCGGACGTAGTAGTATCGGAGGAGATTTTCTTCTCTGAGCCGAAATATCCAATGAGTCTTTTGGCCTTAGTTTTCGTTCTATCTCTTTTTTCTTTATCATTTGATTCTAATCCAAGTGGAAACTTTCCTTGCTTTCTGTACGTTCGACCATTTTTCATGAAGTCTGGGGAGCGTGCTGGAATTAAAGATATGGCTGGTTTGGCTCCAGAAGGTTCTCAATTTGATGCACGTCAGTATGACACAAAAATGAATGAGTTACTTTCAGCTGATGGACAGGATTTCTTCACCTCATACGATGAAGTTTATGATAGTTTTGATTCTATGGGCCTGCAAGAAAATCTTCTCAGAGGCATCTATGCCTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGAATTGTTCCTTTTTGCAAAGGGCTTGATGTGATCCAACAAGCCCAGTCTGGAACAGGGAAGACTGCAACTTTTTGCTCTGGCATTTTGCAGCAACTTGATTATGGTCTCGTGCAATGCCAGGCTTTGGTCCTGGCACCCACTAGGGAACTGGCCCAACAGATTGAGAAGGTTATGCGGGCCCTTGGTGATTATCTTGGTGTGAAAGTTCATGCTTGTGTTGGTGGGACAAGTGTACGGGAAGACCAGCGCATTCTTCAAGCTGGTGTTCATGTAGTTGTTGGTACGCCTGGTCGTGTGTTTGATATGTTACGTAGACAGTCACTTCGTCCTGACTACATTCGGATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCTCGTGGATTTAAGGATCAGATTTATGACATTTTCCAGCTGCTACCATCCAAGATTCAAGTTGGGGTCTTCTCTGCTACAATGCCTCCTGAAGCCCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTTAGAATTCTTGTAAAGCGTGATGAGCTCACCTTGGAAGGTATCAAGCAGTTCTATGTGAATGTTGACAAGGAAGACTGGAAGCTCGAGACCCTCTGTGATCTTTATGAGACTTTGGCCATCACCCAGAGTGTTATCTTTGTCAATACTCGACGTAAAGTTGATTGGCTCACTGATAAGATGCGAAGCCGTGACCACACTGTATCTGCTACCCATGGTGACATGGACCAGAACACCCGAGACATTATTATGCGTGAGTTCCGTTCAGGTTCTTCTAGGGTTCTGATTACCACTGATCTATTGGCCCGTGGTATTGATGTCCAGCAGGTTTCTCTCGTTATTAACTATGATCTGCCGACACAACCGGAGAATTACCTTCATCGTATAGGAAGAAGTGGCCGTTTTGGAAGAAAAGGTGTTGCGATCAACTTTGTAACGACAGAGGACGAAAGAATGCTATTCGACATCCAGAAGTTCTACAATGTGGTAATTGAAGAGCTGCCAGCCAATGTTGCTGATCTCCTGTGA | 2400 | 43.88 | MGNQKQKWTSEEEDALLAGVNKHGPGKWKNILKDPDFAPSLTHRSNIDLKSSGPQVTVALDELYKIFFESVPRCIFEIAYVPVLLETMMTCDKWRNLSVSTASQGSKEKSRIPKAKAIVAAISNNQSSAPAKLIAAADTAGDDTPNNSTQDGKNVPRYYSMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPKQKDVRQRISQQTMGVVMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEINLTNLAKLSCNAFREVDDADVVVSEEIFFSEPKYPMSLLALVFVLSLFSLSFDSNPSGNFPCFLYVRPFFMKSGERAGIKDMAGLAPEGSQFDARQYDTKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVVIEELPANVADLL | 799 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 28775908 | 28785307 | + | CcPI632755_07g014660.1 | Cco07g1466 | 184119 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g1466 | 799 | Gene3D | - | 2 | 99 | - | - | |
Cco07g1466 | 799 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 423 | 785 | - | GO:0003723(PANTHER)|GO:0003724(PANTHER) | |
Cco07g1466 | 799 | FunFam | Telomere repeat-binding factor 1 | 2 | 54 | - | - | |
Cco07g1466 | 799 | Pfam | DEAD/DEAH box helicase | 451 | 613 | IPR011545 | GO:0003676(InterPro)|GO:0005524(InterPro) | |
Cco07g1466 | 799 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 154 | 222 | IPR005818 | GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro) | |
Cco07g1466 | 799 | ProSiteProfiles | Myb-like domain profile. | 1 | 50 | IPR001005 | - | |
Cco07g1466 | 799 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 573 | 581 | IPR000629 | - | |
Cco07g1466 | 799 | Gene3D | - | 151 | 238 | IPR036388 | - | |
Cco07g1466 | 799 | SMART | helicmild6 | 679 | 760 | IPR001650 | - | |
Cco07g1466 | 799 | SUPERFAMILY | Homeodomain-like | 2 | 50 | IPR009057 | - | |
Cco07g1466 | 799 | CDD | DEADc_EIF4A | 431 | 628 | - | - | |
Cco07g1466 | 799 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 495 | 780 | IPR027417 | - | |
Cco07g1466 | 799 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 638 | 799 | IPR001650 | - | |
Cco07g1466 | 799 | Pfam | Helicase conserved C-terminal domain | 652 | 760 | IPR001650 | - | |
Cco07g1466 | 799 | FunFam | Eukaryotic initiation factor 4A-II | 414 | 633 | - | - | |
Cco07g1466 | 799 | SMART | ultradead3 | 445 | 642 | IPR014001 | - | |
Cco07g1466 | 799 | Pfam | linker histone H1 and H5 family | 156 | 215 | IPR005818 | GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro) | |
Cco07g1466 | 799 | SMART | h15plus2 | 152 | 217 | IPR005818 | GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro) | |
Cco07g1466 | 799 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 457 | 627 | IPR014001 | - | |
Cco07g1466 | 799 | Gene3D | - | 416 | 634 | IPR027417 | - | |
Cco07g1466 | 799 | CDD | SF2_C_DEAD | 639 | 769 | - | - | |
Cco07g1466 | 799 | FunFam | Eukaryotic initiation factor 4A-III | 634 | 799 | - | - | |
Cco07g1466 | 799 | SUPERFAMILY | Winged helix DNA-binding domain | 151 | 233 | IPR036390 | - | |
Cco07g1466 | 799 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 426 | 454 | IPR014014 | GO:0003724(InterPro) | |
Cco07g1466 | 799 | Gene3D | - | 635 | 799 | IPR027417 | - | |
Cco07g1466 | 799 | CDD | SANT_TRF | 6 | 50 | - | - | |
Cco07g1466 | 799 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 1 | 33 | IPR017930 | - | |
Cco07g1466 | 799 | Pfam | Myb-like DNA-binding domain | 5 | 33 | IPR001005 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g1466 | Cco-Chr7:28775908 | Cco10g1180 | Cco-Chr10:24434808 | 1.20E-140 | dispersed | |
Cco01g0554 | Cco-Chr1:5405797 | Cco07g1466 | Cco-Chr7:28775908 | 5.10E-39 | transposed | |
Cco04g2263 | Cco-Chr4:36169214 | Cco07g1466 | Cco-Chr7:28775908 | 1.70E-23 | transposed | |
Cco05g0203 | Cco-Chr5:1586778 | Cco07g1466 | Cco-Chr7:28775908 | 8.00E-73 | transposed | |
Cco05g0672 | Cco-Chr5:5490251 | Cco07g1466 | Cco-Chr7:28775908 | 3.60E-49 | transposed | |
Cco05g1414 | Cco-Chr5:15721147 | Cco07g1466 | Cco-Chr7:28775908 | 2.80E-56 | transposed | |
Cco05g2764 | Cco-Chr5:35493949 | Cco07g1466 | Cco-Chr7:28775908 | 3.00E-13 | transposed | |
Cco06g1933 | Cco-Chr6:29602841 | Cco07g1466 | Cco-Chr7:28775908 | 2.10E-44 | transposed | |
Cco07g0219 | Cco-Chr7:2191865 | Cco07g1466 | Cco-Chr7:28775908 | 6.30E-45 | transposed | |
Cco07g1444 | Cco-Chr7:28540198 | Cco07g1466 | Cco-Chr7:28775908 | 1.10E-50 | transposed | |
Cco08g1501 | Cco-Chr8:26752415 | Cco07g1466 | Cco-Chr7:28775908 | 9.00E-63 | transposed | |
Cco09g0297 | Cco-Chr9:2605205 | Cco07g1466 | Cco-Chr7:28775908 | 8.50E-49 | transposed | |
Cco10g0991 | Cco-Chr10:21443006 | Cco07g1466 | Cco-Chr7:28775908 | 1.20E-17 | transposed | |
Cco10g1390 | Cco-Chr10:26956633 | Cco07g1466 | Cco-Chr7:28775908 | 2.30E-48 | transposed | |
Cco11g1960 | Cco-Chr11:32103579 | Cco07g1466 | Cco-Chr7:28775908 | 2.00E-48 | transposed | |
Cco07g1466 | Cco-Chr7:28775908 | Cco09g0073 | Cco-Chr9:627065 | 1.70E-232 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59687 | PF00270 | DEAD | 1.40E-39 | CL0023 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g1466 | K03257 | - | csv:101223055 | 817.379 |