Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1466 ATGGGAAACCAGAAGCAAAAGTGGACGTCAGAGGAGGAAGACGCACTTTTGGCGGGCGTCAATAAGCACGGTCCTGGAAAGTGGAAGAACATTCTCAAGGATCCTGATTTCGCTCCGTCTCTCACTCATCGCTCTAACATTGACCTCAAGTCTAGTGGACCCCAAGTAACTGTGGCCTTGGATGAACTGTATAAGATCTTCTTCGAGTCTGTTCCTAGATGCATCTTTGAGATTGCTTATGTTCCAGTATTACTTGAAACAATGATGACATGTGACAAATGGCGTAATTTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGATTCCTAAAGCAAAAGCTATCGTTGCTGCTATTTCTAACAACCAAAGCTCTGCTCCTGCTAAGCTTATTGCAGCTGCTGATACTGCAGGGGATGATACACCAAACAACAGCACACAAGATGGGAAAAATGTCCCAAGGTATTATTCAATGATTTTTGAAGCCCTTTCAACTATAAAAGATTCTAATGGATGTGACATAGGTACAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGAAGGCTTGTTTCACAAGGGAAGCTTGAAAAGGTTCAAAATTGCTACAAGGTGAAGAAAGACAATTCGTTGGCAGTTAAAACTCCTACTCCCAAACAAAAAGATGTCAGGCAACGGATATCGCAACAGACTATGGGAGTGGTGATGCCATCAGGGGAGACAGTGGAAGATGCAGCGAAAGCGGCTGCCTACAAAGTTGCTGATGCAGAGAACAAATCCTTCTTAGCTGCTGAAGCTGTGAAGGAGGCAGAGAGAATTGCAAAGATGGCCGAAGATACAGATTCGATGCTACAGATTATAAAAGAGATAAACTTGACTAACTTGGCTAAGCTTTCCTGTAATGCCTTTCGGGAGGTGGATGATGCGGACGTAGTAGTATCGGAGGAGATTTTCTTCTCTGAGCCGAAATATCCAATGAGTCTTTTGGCCTTAGTTTTCGTTCTATCTCTTTTTTCTTTATCATTTGATTCTAATCCAAGTGGAAACTTTCCTTGCTTTCTGTACGTTCGACCATTTTTCATGAAGTCTGGGGAGCGTGCTGGAATTAAAGATATGGCTGGTTTGGCTCCAGAAGGTTCTCAATTTGATGCACGTCAGTATGACACAAAAATGAATGAGTTACTTTCAGCTGATGGACAGGATTTCTTCACCTCATACGATGAAGTTTATGATAGTTTTGATTCTATGGGCCTGCAAGAAAATCTTCTCAGAGGCATCTATGCCTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGAATTGTTCCTTTTTGCAAAGGGCTTGATGTGATCCAACAAGCCCAGTCTGGAACAGGGAAGACTGCAACTTTTTGCTCTGGCATTTTGCAGCAACTTGATTATGGTCTCGTGCAATGCCAGGCTTTGGTCCTGGCACCCACTAGGGAACTGGCCCAACAGATTGAGAAGGTTATGCGGGCCCTTGGTGATTATCTTGGTGTGAAAGTTCATGCTTGTGTTGGTGGGACAAGTGTACGGGAAGACCAGCGCATTCTTCAAGCTGGTGTTCATGTAGTTGTTGGTACGCCTGGTCGTGTGTTTGATATGTTACGTAGACAGTCACTTCGTCCTGACTACATTCGGATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCTCGTGGATTTAAGGATCAGATTTATGACATTTTCCAGCTGCTACCATCCAAGATTCAAGTTGGGGTCTTCTCTGCTACAATGCCTCCTGAAGCCCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTTAGAATTCTTGTAAAGCGTGATGAGCTCACCTTGGAAGGTATCAAGCAGTTCTATGTGAATGTTGACAAGGAAGACTGGAAGCTCGAGACCCTCTGTGATCTTTATGAGACTTTGGCCATCACCCAGAGTGTTATCTTTGTCAATACTCGACGTAAAGTTGATTGGCTCACTGATAAGATGCGAAGCCGTGACCACACTGTATCTGCTACCCATGGTGACATGGACCAGAACACCCGAGACATTATTATGCGTGAGTTCCGTTCAGGTTCTTCTAGGGTTCTGATTACCACTGATCTATTGGCCCGTGGTATTGATGTCCAGCAGGTTTCTCTCGTTATTAACTATGATCTGCCGACACAACCGGAGAATTACCTTCATCGTATAGGAAGAAGTGGCCGTTTTGGAAGAAAAGGTGTTGCGATCAACTTTGTAACGACAGAGGACGAAAGAATGCTATTCGACATCCAGAAGTTCTACAATGTGGTAATTGAAGAGCTGCCAGCCAATGTTGCTGATCTCCTGTGA 2400 43.88 MGNQKQKWTSEEEDALLAGVNKHGPGKWKNILKDPDFAPSLTHRSNIDLKSSGPQVTVALDELYKIFFESVPRCIFEIAYVPVLLETMMTCDKWRNLSVSTASQGSKEKSRIPKAKAIVAAISNNQSSAPAKLIAAADTAGDDTPNNSTQDGKNVPRYYSMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPKQKDVRQRISQQTMGVVMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEINLTNLAKLSCNAFREVDDADVVVSEEIFFSEPKYPMSLLALVFVLSLFSLSFDSNPSGNFPCFLYVRPFFMKSGERAGIKDMAGLAPEGSQFDARQYDTKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVVIEELPANVADLL 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28775908 28785307 + CcPI632755_07g014660.1 Cco07g1466 184119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1466 799 Gene3D - 2 99 - -
Cco07g1466 799 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 423 785 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Cco07g1466 799 FunFam Telomere repeat-binding factor 1 2 54 - -
Cco07g1466 799 Pfam DEAD/DEAH box helicase 451 613 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cco07g1466 799 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 154 222 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cco07g1466 799 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Cco07g1466 799 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 573 581 IPR000629 -
Cco07g1466 799 Gene3D - 151 238 IPR036388 -
Cco07g1466 799 SMART helicmild6 679 760 IPR001650 -
Cco07g1466 799 SUPERFAMILY Homeodomain-like 2 50 IPR009057 -
Cco07g1466 799 CDD DEADc_EIF4A 431 628 - -
Cco07g1466 799 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 495 780 IPR027417 -
Cco07g1466 799 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 638 799 IPR001650 -
Cco07g1466 799 Pfam Helicase conserved C-terminal domain 652 760 IPR001650 -
Cco07g1466 799 FunFam Eukaryotic initiation factor 4A-II 414 633 - -
Cco07g1466 799 SMART ultradead3 445 642 IPR014001 -
Cco07g1466 799 Pfam linker histone H1 and H5 family 156 215 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cco07g1466 799 SMART h15plus2 152 217 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cco07g1466 799 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 457 627 IPR014001 -
Cco07g1466 799 Gene3D - 416 634 IPR027417 -
Cco07g1466 799 CDD SF2_C_DEAD 639 769 - -
Cco07g1466 799 FunFam Eukaryotic initiation factor 4A-III 634 799 - -
Cco07g1466 799 SUPERFAMILY Winged helix DNA-binding domain 151 233 IPR036390 -
Cco07g1466 799 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 426 454 IPR014014 GO:0003724(InterPro)
Cco07g1466 799 Gene3D - 635 799 IPR027417 -
Cco07g1466 799 CDD SANT_TRF 6 50 - -
Cco07g1466 799 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Cco07g1466 799 Pfam Myb-like DNA-binding domain 5 33 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1466 Cco-Chr7:28775908 Cco10g1180 Cco-Chr10:24434808 1.20E-140 dispersed
Cco01g0554 Cco-Chr1:5405797 Cco07g1466 Cco-Chr7:28775908 5.10E-39 transposed
Cco04g2263 Cco-Chr4:36169214 Cco07g1466 Cco-Chr7:28775908 1.70E-23 transposed
Cco05g0203 Cco-Chr5:1586778 Cco07g1466 Cco-Chr7:28775908 8.00E-73 transposed
Cco05g0672 Cco-Chr5:5490251 Cco07g1466 Cco-Chr7:28775908 3.60E-49 transposed
Cco05g1414 Cco-Chr5:15721147 Cco07g1466 Cco-Chr7:28775908 2.80E-56 transposed
Cco05g2764 Cco-Chr5:35493949 Cco07g1466 Cco-Chr7:28775908 3.00E-13 transposed
Cco06g1933 Cco-Chr6:29602841 Cco07g1466 Cco-Chr7:28775908 2.10E-44 transposed
Cco07g0219 Cco-Chr7:2191865 Cco07g1466 Cco-Chr7:28775908 6.30E-45 transposed
Cco07g1444 Cco-Chr7:28540198 Cco07g1466 Cco-Chr7:28775908 1.10E-50 transposed
Cco08g1501 Cco-Chr8:26752415 Cco07g1466 Cco-Chr7:28775908 9.00E-63 transposed
Cco09g0297 Cco-Chr9:2605205 Cco07g1466 Cco-Chr7:28775908 8.50E-49 transposed
Cco10g0991 Cco-Chr10:21443006 Cco07g1466 Cco-Chr7:28775908 1.20E-17 transposed
Cco10g1390 Cco-Chr10:26956633 Cco07g1466 Cco-Chr7:28775908 2.30E-48 transposed
Cco11g1960 Cco-Chr11:32103579 Cco07g1466 Cco-Chr7:28775908 2.00E-48 transposed
Cco07g1466 Cco-Chr7:28775908 Cco09g0073 Cco-Chr9:627065 1.70E-232 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59687 PF00270 DEAD 1.40E-39 CL0023 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1466 K03257 - csv:101223055 817.379