Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1482 ATGAGTAATTGGTTGGGTTTTTCTCTTACTCCCCATCTCAGAATCCATGATGCTGCGGCCGCCGATGAACAACCCGACCACGCCGCCTTCCCGCATCTCATGCCGCTCCGCTCTGATGGATCTCTTTGTATCGCCGCCGCCCACGATTGGAGATCGTATGAGAATGAAATGGGTGCAACGAATGAAGAGGAAAGTCCAAAGCTTGAGGACTTTCTGGGGAATTGCTATTCAAACTCACCGCCAAACGATCAGACGCATAGTAGCAACGCCGCCGCCTTTATTCAGCCGAATAATAATAATAATAATAATAGTAGTAGTAGTAATAATAATAATGATGATAAGTACCATTACCAAGCGGATCATCAAACCCATCAATCTCTAATTCCTAACAATACTAATGGAATTTATAAGTCCTGGTTGGGACCCACTCCGCAAAATGAGTGTCGGTTTCAATCTCTTTCTCTCGGTATGAACCCCAACTCCCAAAACGACGTCGCTTCATTGCCTTCACCGCCCTCGCCGCCGCCGCATATGGCTGGTGATTCCCGGAAACGCCCCATGCCGGTAGCCAAGCCTCTGATTAAAGAACCTGTACCTAGAAAATCCATCGATACTTTTGGACAAAGAACCTCCCAGTATCGCGGTGTCACAAGGCATAGATGGACAGGAAGATATGAGGCACATTTATGGGATAACAGCTGTAGAAAAGAGGGACAAACAAGGAAGGGAAGGCAAGTTTATCTTGGTGGTTATGATAAGGAAGAGAAAGCGGCACGAGCGTATGATTTAGCTGCTTTAAAATATTGGGGACCAACTACGCATATAAATTTTCCGCTGAGCACTTATGAAAACGAGCTGGAAGAGATGAAGAACATGACCAGACAAGAGTTTGTAGCCAATTTGAGAAGGAAAAGCAGTGGATTCTCAAGAGGAGCTTCAATGTACAGAGGAGTTACAAGACATCATCAACATGGAAGGTGGCAAGCTAGAATAGGAAGGGTTGCAGGAAATAAAGATTTGTACCTTGGCACATTTAGCACACAAGAGGAGGCAGCGGAGGCGTATGACATAGCGGCAATCAAGTTTAGGGGGACAAGTGCAGTAACAAATTTCGACATTAGTAGGTATGACGTAAAGAGGATTTGCTCTAGCTCGACTCTGATTGCTAGTGACCTTGCGAAACGTTCACCATTAAAGGACGGTACTCCCTCGACTAATGAAGACTATTCTGCCTGTGCTTCTCCATCATCATCCTCGCAACCTCTCTTGGCCATTAGTGGCGATGGTGGTGCTGAGAGCCACCACGAGTTGGCTGACGTGGTCTGGTGTGACAATACTGCTACAGACGATAGTAATCAGCACCACGAGAATGTAGCAAAGATGAACAACGACTTGAGTTTGATGGGTTCGAGCAATAGAACGATGGATCCATCGTCGAAGTGCTCTCCGGTGCAAAACAATGAAGAGTTCGGGATTGGGGTCGGGGCTGGAGGGGAGTACTCACAAGGCTATTTCTCAATGCAAGAAGAAAAATATGAAGATGGGAATGAGGAGGGTGATCAAAATAGTAGGCAGGTGAGTGTAACATTGGCTCATCATCATGTTCCAATGTTTGCACTATGGAACCAATGA 1632 46.08 MSNWLGFSLTPHLRIHDAAAADEQPDHAAFPHLMPLRSDGSLCIAAAHDWRSYENEMGATNEEESPKLEDFLGNCYSNSPPNDQTHSSNAAAFIQPNNNNNNNSSSSNNNNDDKYHYQADHQTHQSLIPNNTNGIYKSWLGPTPQNECRFQSLSLGMNPNSQNDVASLPSPPSPPPHMAGDSRKRPMPVAKPLIKEPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYENELEEMKNMTRQEFVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPLKDGTPSTNEDYSACASPSSSSQPLLAISGDGGAESHHELADVVWCDNTATDDSNQHHENVAKMNNDLSLMGSSNRTMDPSSKCSPVQNNEEFGIGVGAGGEYSQGYFSMQEEKYEDGNEEGDQNSRQVSVTLAHHHVPMFALWNQ 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28971771 28975583 + CcPI632755_07g014820.1 Cco07g1482 184135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1482 543 MobiDBLite consensus disorder prediction 150 187 - -
Cco07g1482 543 Gene3D AP2/ERF domain 314 374 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1482 543 Gene3D AP2/ERF domain 211 280 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1482 543 ProSiteProfiles AP2/ERF domain profile. 314 372 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1482 543 FunFam AP2-like ethylene-responsive transcription factor 313 374 - -
Cco07g1482 543 PRINTS Ethylene responsive element binding protein signature 354 374 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1482 543 PRINTS Ethylene responsive element binding protein signature 213 224 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1482 543 MobiDBLite consensus disorder prediction 150 167 - -
Cco07g1482 543 CDD AP2 211 280 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1482 543 SMART rav1_2 314 378 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1482 543 SMART rav1_2 212 284 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1482 543 SUPERFAMILY DNA-binding domain 313 374 IPR016177 GO:0003677(InterPro)
Cco07g1482 543 MobiDBLite consensus disorder prediction 70 116 - -
Cco07g1482 543 MobiDBLite consensus disorder prediction 395 421 - -
Cco07g1482 543 FunFam AP2-like ethylene-responsive transcription factor ANT 211 280 - -
Cco07g1482 543 CDD AP2 313 374 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1482 543 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 101 445 - -
Cco07g1482 543 ProSiteProfiles AP2/ERF domain profile. 212 278 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1482 543 MobiDBLite consensus disorder prediction 399 421 - -
Cco07g1482 543 Pfam AP2 domain 315 364 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1482 543 Pfam AP2 domain 212 270 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1482 543 SUPERFAMILY DNA-binding domain 211 280 IPR016177 GO:0003677(InterPro)
Cco07g1482 543 MobiDBLite consensus disorder prediction 75 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2921 Cco-Chr5:36731248 Cco07g1482 Cco-Chr7:28971771 4.40E-101 dispersed
Cco07g1482 Cco-Chr7:28971771 Cco11g0916 Cco-Chr11:13224340 6.40E-98 dispersed
Cco07g1482 Cco-Chr7:28971771 Cco08g1852 Cco-Chr8:29537290 8.60E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59690 PF00847 AP2 4.20E-13 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1482 K09285 - csv:101205762 884.019