Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1495 ATGCACCTTCTTTCCCACCATTTCTTGCTACTGCTACTGCTACTGGTATGCTTCTCTTTTTCCTTTCATGTTGTTTCTGGCTTAAGCTTTGATGGGTTGTCTTTATTGTCTCTCCAAACCCACTGGATTTCCAATACCCCTTTTGTCCCTTTCTGGAATGCCTGTGATTCCACTCCCTGTTCTTGGGATGGGATTGAGTGTGATCAAAACCTTCGTGTTATCACCTTCAATCTCTCAAACCATGGCATTTCGGGTCAGCTTGGACCCGAAATTGCACAGTACTTGGATCTCTCCCTGAACCAATTTGCTGGAGAAATTCCTCACTCCTTAACTCCACTTGGGAACTTGACGTTTGTGAACTTCCATGCCAATGTTCTAACCGGTCATATACCTGACTCGCTTTTTCAAAATCTGAATTTGCATGAAGTGTATCTTAGTGAAAACAATCTCAATGGTTCTATTCCTTCAAATGTGGGGAATTTGAGGCAACTATTGCATTTGTATCTGTATGGAAATCATTTGTCCGGTACCATACCTTCTTCCATAGGGAATTGTAGTCAATTGGTGAATCTCTATTTGAATCAGAACCAGTTGGCAGGAGTGTTGCCCAATAGTCTTAACAATCTTGATAATCTTGTTCATTTGGGTGTCAGCCACAACAATCTTGAAGGTGCAATTCCTTTGGGTTCAGGAGGTTGCCAGAGTTTAGAATATATAGATTTGTCATTCAATGGCTATACAGGAGGTATACCTGCCGGGCTGGGCAACTGTGGTGGCTTAAGAATCTTACTCATTATAAATTCAAGTCTAACAGGTCATATTCCTTCCTCCTTTGGCCGCCTAAGTAATCTTACGATTCTTGATCTCTCTAGAAATCAACTGTCTGGTAATATACCTCCTGAATTTGGGGCTTGCAAATCCTTGAAAGAACTGGATTTGTACGTCAACCAACTTGAGGGACGTATCCCTAGTGAATTGGGTTTGATAAGTGGATTAGAGACCCTTCAATTGTTTTCGAACCGGTTGACTGGTGAGATTCCAATTAGCATCTGGAAGATTGCAAGTCTCCAACATATTCTTGTGTACGACAACAACTTCTGTGGGGAACTGCCCTCGATAATAACTGAACTCAAGCACCTCAAAAACATTTCTGTATTCGACAACCATTTTTCTGGAGTCATACCTCAAAGCTTGGGACTCAACAGTAGCTTAGTGCAAGTGGAGTTCACCAATAACCAGTTCACTGGTCAAATTCCACCTAATTTATGCTCTGGAAAGACATTAAAGGTGTTAAACTTAGGTTTGAATCAATTTCAAGGAAACATACCTTCTGATATAGGAACTTGTTTGACTCTTCAGAGATTGATTTTGCAAAGGAACAACCTCACAGGGGTTCTGCCACAATTTATGAGAAATCACAGCCTATCGTACATGGATGCCAATGAAAATAACCTGAATGGAACAATTCCATCAAGTTTGGGAAATTGCACCCTTCTCACTTCAATTAATTTGTCAAACAACAAGCTTACAGGTCATATACCAAATGAGTTAGGCAATCTTGTGAATCTTCAAAGTTTGAGCTTGTCTCACAACTTCTTGGAAGGACCTTTGCCATCTTCCCTGTCAAATTGTACCATGTTGAGTAATTTTGATGTAGGATTCAATTTATTGAATGGTTCTATATCTCGTAGTTTGGCCGGCTGGAAAGTTATATCCACATTGATATTAAAAGAGAATAGATTTACTGGAGGCATTCCGAGTGTATTATCAAAACTTGAAAGCCTTTCAGTACTAGATCTTGGTGGCAATTTGTTTGGAGGAGAAATCCCTTCATCCATTGGAGGTTGGAAGAATATGTTTTATTATCTGAATCTTAGTGACAATGGATTAACTGGCCAAATACCTTCTGAGCTGAAGAATTTGGTCATGGTAGAGAAGTTAGATATGTCTCACAATAATTTGACGGGAAGTATAAGAGTTCTTGGTGAACTAAGTTCATTGTTAGTCGAGTTTAACATTTCAGATAATTTCTTCACGGGTCCTGTGCCACAGACATTAATGAAGTTTCTGAATTCTCGTCCCTCATCGTTCTTAGGCAATCCTGGGCTGTGCATCAGCTGTGATGAACTAGATGGCTTAAGTTGCAATGGAAGTAGCAGTATCAAACCTTGTGCTAGCCATTCGAGCTCTTGTGATAGCTCTCGTCTTAACAATATACAAATTGCAAAGATAGCTCTTGGATCTTCGATCTTTATTGTTTTCCTGCTTCTTGGGTTGGTTTATAAATTTGTTTATATCAGAAGAAACAAGGAAAAAATTGACACCTCTGCTCAAGTAGGAACAACTTCTTTGCTTGTCCACATGGTAATAGAGGCCACTGATAATCTAGATGAGCGTTTCGTCATTGGGAGAGGAGCACATGGAGTTGTTTATAAGGCTTCACTTGATTCGAAGGGAACTTTTGCTGTAAAGAAGCTTACATTTGAAGGATGTAAAGGGGCAAGCCAGAGCATGATTAGGGAAATTAAAACTGTTGGTAACATCAAACACCGAAACCTGATCGCTTTGGAAGATTTTTGGTTGGGAAAAGACTATGGTCTATTACTTTACAGATACCAGCCTAATGGGAGTCTTGATGATGTGTTGCATCAGATGAATCCTGCTCCAGCTCTGACATGGGAAGACCGTCATAATATAGCCATTGGTATTGCACATGGATTGACATATCTTCATAACGATTGTGATCCTCCTATAATACACTGTGACATTAAACCGCATAATATACTTCTAGATTCGGAGATGGAACCTCATATTGCTGATTTTGGTCTTGCAAAGCTGCTGGACCAAACTTCTGCACCAATGGCTTCGTCTTCTTTTGCAGGAACAATTGGCTACATTGCACCAGGTATCATTCTACACATACATTATGAATTAGCTCTTCATTCTCATGTTTTTGTTTTGTAG 2964 39.84 MHLLSHHFLLLLLLLVCFSFSFHVVSGLSFDGLSLLSLQTHWISNTPFVPFWNACDSTPCSWDGIECDQNLRVITFNLSNHGISGQLGPEIAQYLDLSLNQFAGEIPHSLTPLGNLTFVNFHANVLTGHIPDSLFQNLNLHEVYLSENNLNGSIPSNVGNLRQLLHLYLYGNHLSGTIPSSIGNCSQLVNLYLNQNQLAGVLPNSLNNLDNLVHLGVSHNNLEGAIPLGSGGCQSLEYIDLSFNGYTGGIPAGLGNCGGLRILLIINSSLTGHIPSSFGRLSNLTILDLSRNQLSGNIPPEFGACKSLKELDLYVNQLEGRIPSELGLISGLETLQLFSNRLTGEIPISIWKIASLQHILVYDNNFCGELPSIITELKHLKNISVFDNHFSGVIPQSLGLNSSLVQVEFTNNQFTGQIPPNLCSGKTLKVLNLGLNQFQGNIPSDIGTCLTLQRLILQRNNLTGVLPQFMRNHSLSYMDANENNLNGTIPSSLGNCTLLTSINLSNNKLTGHIPNELGNLVNLQSLSLSHNFLEGPLPSSLSNCTMLSNFDVGFNLLNGSISRSLAGWKVISTLILKENRFTGGIPSVLSKLESLSVLDLGGNLFGGEIPSSIGGWKNMFYYLNLSDNGLTGQIPSELKNLVMVEKLDMSHNNLTGSIRVLGELSSLLVEFNISDNFFTGPVPQTLMKFLNSRPSSFLGNPGLCISCDELDGLSCNGSSSIKPCASHSSSCDSSRLNNIQIAKIALGSSIFIVFLLLGLVYKFVYIRRNKEKIDTSAQVGTTSLLVHMVIEATDNLDERFVIGRGAHGVVYKASLDSKGTFAVKKLTFEGCKGASQSMIREIKTVGNIKHRNLIALEDFWLGKDYGLLLYRYQPNGSLDDVLHQMNPAPALTWEDRHNIAIGIAHGLTYLHNDCDPPIIHCDIKPHNILLDSEMEPHIADFGLAKLLDQTSAPMASSSFAGTIGYIAPGIILHIHYELALHSHVFVL 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29031990 29035040 - CcPI632755_07g014950.1 Cco07g1495 184148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1495 987 Gene3D Ribonuclease Inhibitor 181 260 IPR032675 -
Cco07g1495 987 Gene3D Ribonuclease Inhibitor 331 404 IPR032675 -
Cco07g1495 987 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 67 328 - -
Cco07g1495 987 ProSitePatterns Protein kinases ATP-binding region signature. 802 825 IPR017441 GO:0005524(InterPro)
Cco07g1495 987 Gene3D Ribonuclease Inhibitor 405 710 IPR032675 -
Cco07g1495 987 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 385 715 - -
Cco07g1495 987 SMART LRR_sd22_2 520 552 - -
Cco07g1495 987 SMART LRR_sd22_2 641 666 - -
Cco07g1495 987 SMART LRR_sd22_2 185 211 - -
Cco07g1495 987 SMART LRR_sd22_2 281 313 - -
Cco07g1495 987 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 315 968 - -
Cco07g1495 987 SMART LRR_typ_2 209 233 IPR003591 -
Cco07g1495 987 SMART LRR_typ_2 281 305 IPR003591 -
Cco07g1495 987 SMART LRR_typ_2 161 185 IPR003591 -
Cco07g1495 987 SMART LRR_typ_2 592 616 IPR003591 -
Cco07g1495 987 SMART LRR_typ_2 520 544 IPR003591 -
Cco07g1495 987 SMART LRR_typ_2 186 208 IPR003591 -
Cco07g1495 987 SMART LRR_typ_2 113 137 IPR003591 -
Cco07g1495 987 SMART LRR_typ_2 641 664 IPR003591 -
Cco07g1495 987 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Cco07g1495 987 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 761 872 - -
Cco07g1495 987 Gene3D Transferase(Phosphotransferase) domain 1 874 981 - -
Cco07g1495 987 SMART serkin_6 796 986 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1495 987 FunFam Os07g0541700 protein 873 962 - -
Cco07g1495 987 SUPERFAMILY Protein kinase-like (PK-like) 779 976 IPR011009 -
Cco07g1495 987 Gene3D Ribonuclease Inhibitor 30 180 IPR032675 -
Cco07g1495 987 SUPERFAMILY L domain-like 50 391 - -
Cco07g1495 987 Pfam Leucine Rich Repeat 139 161 IPR001611 GO:0005515(InterPro)
Cco07g1495 987 Pfam Leucine Rich Repeat 235 257 IPR001611 GO:0005515(InterPro)
Cco07g1495 987 Pfam Leucine Rich Repeat 164 185 IPR001611 GO:0005515(InterPro)
Cco07g1495 987 Pfam Leucine Rich Repeat 594 615 IPR001611 GO:0005515(InterPro)
Cco07g1495 987 Pfam Leucine Rich Repeat 499 520 IPR001611 GO:0005515(InterPro)
Cco07g1495 987 Pfam Leucine Rich Repeat 522 544 IPR001611 GO:0005515(InterPro)
Cco07g1495 987 Pfam Leucine Rich Repeat 622 641 IPR001611 GO:0005515(InterPro)
Cco07g1495 987 Pfam Leucine Rich Repeat 474 496 IPR001611 GO:0005515(InterPro)
Cco07g1495 987 Pfam Protein kinase domain 801 976 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1495 987 Pfam Leucine rich repeat 259 318 IPR001611 GO:0005515(InterPro)
Cco07g1495 987 Gene3D Ribonuclease Inhibitor 261 330 IPR032675 -
Cco07g1495 987 SUPERFAMILY RNI-like 322 673 - -
Cco07g1495 987 ProSiteProfiles Protein kinase domain profile. 796 987 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1495 987 Gene3D Phosphorylase Kinase; domain 1 767 872 - -
Cco07g1495 987 ProSitePatterns Serine/Threonine protein kinases active-site signature. 918 930 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1495 Cco-Chr7:29031990 Cco07g1497 Cco-Chr7:29048235 2.60E-28 dispersed
Cco07g1495 Cco-Chr7:29031990 Cco07g1496 Cco-Chr7:29039229 6.80E-29 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86990 PF00069 Pkinase 3.70E-34 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1495 K28089 - csv:101204802 1509.58