Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1496 ATGCAGCTTCTTCCCCGCCATTTCTTCCTACTGGTATGCTTCTCTTTCCCTATCTGTGTCGTTCTTGGCTTAACCTCAGATGGGTTGGCTTTATTGTCCCTCCAAACCCGCTGGACTACCCAAACCCCTTTTGTCCCTGTTTGGACTGCTTCTGATTCCACTCCCTGTTCTTGGGCTGGGATTGAATGTGATCAAAACCTTCTTGTCATCACCTTGAATCTCTCTTATTATGGGGTCACGGGTCAGCTTGGACCCGAAATTGCACGTTTGACCCACTTGCGTACCATTGATTTGAACACCAACGGTTTCTCTGGTGAAATTCCTTATGGGATAGGTAACTGCAGCCATTTAGAGTTCTTGGATCTTTCCCTCAACCAATTTGGTGGAGAAATTCCTCAGTCATTAACGCTCCTTAGGAACTTGACGTTTTTGAACTTCCATGACAATGTTCTAACTGGTGCAATACCTGACTCCTTATTTCAAAATCTTAATTTGCAGTATGTGTATCTTAGTGAAAACAATCTCAACAGTTCTATCCCTTCAAATGTAGGGAATTTGAGGCAACTAATTCATTTGTATCTGTATGGAAATCAGTTATCTGGTACCATACCTTCTTCCACAGGGAATTGTAGCCAATTGGAGGATCTTTATTTGGATCAGAATCAGTTAGTTGGAATATTGCCCAACAGTCTTAACAATCTCGATAATCTTGTTAATCTGGGTGTAAGCCACAACAATCTTGAGGGTCCAATTCCTTTGGGTTCAGGCAGTTGCCAGAGTCTTGAATTTATAGATTTGTCTTTCAATGGTTATACAGGAGGTATACCAGCTGGGCTAGGCAATTGTAGTCGCCTAACAACCTTAATCATTGTCAATTCAAGTCTAACAGGTCATATTCCTTCCTCCTTTGGCCAGCTAAGTAACCTTTCGCATCTTGATCTCTCTAGAAATCAACTGTCTGGTAATATACCTCCTGAATTTGGGGCTTGCAAATCCTTGAAAGAACTGGATTTGTACGTCAACCAACTTGAGGGACGTATCCCTAGTGAATTGGGTTTGATAAGTGTATTAGAGACCCTTCAATTGTTTTCGAACCGGTTGACTGGTGAGATTCCAATTAGCATCTGGAAGATTGCAAGTCTCCAACATATTCTTGTGTACGACAACAACCTCTGTGGGGAACTGCCCTCGATAATAACTGAACTCAAGCACCTCAAAAACATTTCTGTATTCGACAACCATTTTTCTGGAGTCATACCTCAAAGCTTGGGACTCAACAGTAGCTTAGTGCAAGTGGAGTTCACCAATAACCAGTTCACTGGTCAAATTCCACCTAATTTATGCTCTGGAAAAACATTAAAGGTGTTAAACTTAGGTTTGAATCAATTTCAAGGAAACATACCTTCTGATATAGGAATTTGTTTGACTCTTCAGAGATTGATTTTGCAAAGGAACAACCTCACAGGGGTTCTGCCACAATTTATGAGAAATCACAGCCTATCGTACATGGATGCCAATGAAAATAACCTGAATGGAACAATTCCATCAAGTTTGGGAAATTGCACCCTTCTCACTTCAATTAATTTGTCAAACAACAAGCTTACAGGTCATATACCAAATGAGTTAGGCAATCTTGTGAATCTTCGAAGTTTGAAATTGTCTCACAACTTCTTAGAAGGACCTTTGCCATCTTCCCTCTCAAATTGCACCAAGATGAATACGTTTGACGTAGGATTCAATTTATTGAATGGTTCTATACCTCATAGTTTGGCCAGCTGGAAAGTAATATCCACTTTGATATTAAAAGAGAATGGATTTACTGGAGGCCTCCCGAATGTATTATCAGAACTTCAAAGCCTTTTACTACTAGATCTTGGTGGCAATTTGTTTGGAGGTGAAATTCCTTCAAATATTGGAGATTTACAGAATCTATTTTATTCCTTGAATCTAAGTAACAATGGGTTAACTGGTCAACTACCTTCTGAGCTCGCGAGTCTGATCAAGCTAGAGGGGTTGGATTTATCTCACAATAATTTGACTGGAAGTCTTAGTGTTCTTGGTGAACTTAGTTCATCGTTAATGGACCTTGACATTTCAGATAATTTCTTTACAGGTCCTGTGCCGCAAACATTAATGAAGTTACTGAAGTCTCATCCCTCATCGTTCTTTGGTAACCCTGGGCTGTGCATTAGCTGTGATGAACTAGATGGCTTAAGTTGCAATAGAAATATCAGTATCAATCCTTGTGGTACTCATTCAAGCTCGCATGGTAGCTCTCGTCTTGGCAAAGTACAGATTGCAATGATAGCTCTTGGGTGTTCACTCTTTATTATTCTTTTGCTTCTTGGGTTGGTTTATAAGTTTGTTTGTAGCAGAAGAAACAAGCAAAACATTGAGACTGCTGCTCAAGGAGGAACAACTTCCTTGCTTGAAAAGGTGATGGAGGCCACTGATAATCTAGATGAGCGTTTCATCATTGGGAGAGGAGCACATGGAGTTGTTTATAAGGCCTCCCTGGATTCAAATAAAATTTTTGCAGTAAAGAAGCTTACATTTATAGAACGTAAAGGGGGAAGTCGGAATATGGTTAAAGAAATTAGAACTGTCAACAACATCAAGCACCGAAACTTGATCTCTTTGGAAGATTATTGGTTAGGAAAAGACCATGGTCTATTGCTTTACAAATACTATCCGAATGGAAGCCTTTATGATGTGTTGCATGGCATGAATCCAGCTCCAGCTCTAACATGGAAAGCCCACTATAATATAGCAATTGGTATTGCTCATGGATTGGCGTATCTCCATTACGATTGTGATCCTCCCATAATACACCGAGACATCAAACCGCAGAATATACTTCTAGATTCGGAGATGGAACCTCACATCGCCGATTTTGGTCTTGCAAGGCTGTTGGATCAAACTTCTGAATCAGCAACTTCATCATCTTTTGTGGGTACAATTGGCTACGTTGCACCAGAGAATGCATTTTCAGCAGCAAGGAGCAAAGCCTCAGATGTGTACAGCTATGGGGTGGTTTTACTCGAGCTGATAACCGGAAAGAAGCCATCAGATCCATCATTTACGGAGGTTGGAAATATGATGGCTTGGGTTCGATCGGTTTGGAATGAGACAGGTGAAATAGATAGAATTGTTGATTCAAGACTTGTGGAAGAACTAGCTAATTTTGATCATAGGGAGCAGATGAAGCAGGTGCTTCTTGTGGCTTTGCGATGCACAGAAAAGGAGCCTAACAGGAGACCGAGAATGAGAGATATTGTGGACCACTTGATTGATTCAAAGACGAGCCATTACAGCAAGCATGGCTAA 3327 40.7 MQLLPRHFFLLVCFSFPICVVLGLTSDGLALLSLQTRWTTQTPFVPVWTASDSTPCSWAGIECDQNLLVITLNLSYYGVTGQLGPEIARLTHLRTIDLNTNGFSGEIPYGIGNCSHLEFLDLSLNQFGGEIPQSLTLLRNLTFLNFHDNVLTGAIPDSLFQNLNLQYVYLSENNLNSSIPSNVGNLRQLIHLYLYGNQLSGTIPSSTGNCSQLEDLYLDQNQLVGILPNSLNNLDNLVNLGVSHNNLEGPIPLGSGSCQSLEFIDLSFNGYTGGIPAGLGNCSRLTTLIIVNSSLTGHIPSSFGQLSNLSHLDLSRNQLSGNIPPEFGACKSLKELDLYVNQLEGRIPSELGLISVLETLQLFSNRLTGEIPISIWKIASLQHILVYDNNLCGELPSIITELKHLKNISVFDNHFSGVIPQSLGLNSSLVQVEFTNNQFTGQIPPNLCSGKTLKVLNLGLNQFQGNIPSDIGICLTLQRLILQRNNLTGVLPQFMRNHSLSYMDANENNLNGTIPSSLGNCTLLTSINLSNNKLTGHIPNELGNLVNLRSLKLSHNFLEGPLPSSLSNCTKMNTFDVGFNLLNGSIPHSLASWKVISTLILKENGFTGGLPNVLSELQSLLLLDLGGNLFGGEIPSNIGDLQNLFYSLNLSNNGLTGQLPSELASLIKLEGLDLSHNNLTGSLSVLGELSSSLMDLDISDNFFTGPVPQTLMKLLKSHPSSFFGNPGLCISCDELDGLSCNRNISINPCGTHSSSHGSSRLGKVQIAMIALGCSLFIILLLLGLVYKFVCSRRNKQNIETAAQGGTTSLLEKVMEATDNLDERFIIGRGAHGVVYKASLDSNKIFAVKKLTFIERKGGSRNMVKEIRTVNNIKHRNLISLEDYWLGKDHGLLLYKYYPNGSLYDVLHGMNPAPALTWKAHYNIAIGIAHGLAYLHYDCDPPIIHRDIKPQNILLDSEMEPHIADFGLARLLDQTSESATSSSFVGTIGYVAPENAFSAARSKASDVYSYGVVLLELITGKKPSDPSFTEVGNMMAWVRSVWNETGEIDRIVDSRLVEELANFDHREQMKQVLLVALRCTEKEPNRRPRMRDIVDHLIDSKTSHYSKHG 1108
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 29039229 29042655 - CcPI632755_07g014960.1 Cco07g1496 184149
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1496 1108 PRINTS Leucine-rich repeat signature 309 322 - -
Cco07g1496 1108 PRINTS Leucine-rich repeat signature 666 679 - -
Cco07g1496 1108 Gene3D Phosphorylase Kinase; domain 1 785 896 - -
Cco07g1496 1108 SUPERFAMILY RNI-like 72 423 - -
Cco07g1496 1108 SMART serkin_6 820 1097 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1496 1108 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 24 178 - -
Cco07g1496 1108 ProSiteProfiles Protein kinase domain profile. 820 1098 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1496 1108 Pfam Leucine Rich Repeat 668 683 IPR001611 GO:0005515(InterPro)
Cco07g1496 1108 Pfam Leucine Rich Repeat 116 136 IPR001611 GO:0005515(InterPro)
Cco07g1496 1108 Pfam Leucine Rich Repeat 647 666 IPR001611 GO:0005515(InterPro)
Cco07g1496 1108 Pfam Leucine Rich Repeat 189 210 IPR001611 GO:0005515(InterPro)
Cco07g1496 1108 Pfam Leucine Rich Repeat 92 114 IPR001611 GO:0005515(InterPro)
Cco07g1496 1108 Pfam Leucine Rich Repeat 164 186 IPR001611 GO:0005515(InterPro)
Cco07g1496 1108 Pfam Leucine Rich Repeat 499 521 IPR001611 GO:0005515(InterPro)
Cco07g1496 1108 Pfam Leucine Rich Repeat 547 569 IPR001611 GO:0005515(InterPro)
Cco07g1496 1108 Pfam Leucine Rich Repeat 260 282 IPR001611 GO:0005515(InterPro)
Cco07g1496 1108 Pfam Leucine Rich Repeat 524 545 IPR001611 GO:0005515(InterPro)
Cco07g1496 1108 Pfam Leucine Rich Repeat 212 234 IPR001611 GO:0005515(InterPro)
Cco07g1496 1108 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 180 275 - -
Cco07g1496 1108 SMART LRR_typ_2 186 210 IPR003591 -
Cco07g1496 1108 SMART LRR_typ_2 138 162 IPR003591 -
Cco07g1496 1108 SMART LRR_typ_2 211 233 IPR003591 -
Cco07g1496 1108 SMART LRR_typ_2 306 330 IPR003591 -
Cco07g1496 1108 SMART LRR_typ_2 617 641 IPR003591 -
Cco07g1496 1108 SMART LRR_typ_2 90 114 IPR003591 -
Cco07g1496 1108 SMART LRR_typ_2 545 569 IPR003591 -
Cco07g1496 1108 SMART LRR_typ_2 666 689 IPR003591 -
Cco07g1496 1108 ProSitePatterns Serine/Threonine protein kinases active-site signature. 942 954 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1496 1108 Gene3D Ribonuclease Inhibitor 179 279 IPR032675 -
Cco07g1496 1108 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 451 737 - -
Cco07g1496 1108 FunFam Serine/threonine-protein kinase-like protein CCR4 897 1108 - -
Cco07g1496 1108 Gene3D Ribonuclease Inhibitor 25 178 IPR032675 -
Cco07g1496 1108 Gene3D Transferase(Phosphotransferase) domain 1 897 1107 - -
Cco07g1496 1108 Pfam Leucine rich repeat 283 343 IPR001611 GO:0005515(InterPro)
Cco07g1496 1108 ProSitePatterns Protein kinases ATP-binding region signature. 826 849 IPR017441 GO:0005524(InterPro)
Cco07g1496 1108 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 785 896 - -
Cco07g1496 1108 SUPERFAMILY RNI-like 264 700 - -
Cco07g1496 1108 Gene3D Ribonuclease Inhibitor 280 449 IPR032675 -
Cco07g1496 1108 ProSiteProfiles Leucine-rich repeat profile. 668 690 IPR001611 GO:0005515(InterPro)
Cco07g1496 1108 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 341 1096 - -
Cco07g1496 1108 Pfam Protein kinase domain 825 1095 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1496 1108 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Cco07g1496 1108 Gene3D Ribonuclease Inhibitor 453 735 IPR032675 -
Cco07g1496 1108 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 300 395 - -
Cco07g1496 1108 SUPERFAMILY Protein kinase-like (PK-like) 803 1096 IPR011009 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1496 Cco-Chr7:29039229 Cco07g1757 Cco-Chr7:31718764 2.90E-60 dispersed
Cco07g1494 Cco-Chr7:29031609 Cco07g1496 Cco-Chr7:29039229 1.30E-42 proximal
Cco07g1496 Cco-Chr7:29039229 Cco07g1499 Cco-Chr7:29072400 1.20E-18 proximal
Cco07g1495 Cco-Chr7:29031990 Cco07g1496 Cco-Chr7:29039229 6.80E-29 tandem
Cco07g1496 Cco-Chr7:29039229 Cco07g1497 Cco-Chr7:29048235 3.20E-35 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86991 PF00069 Pkinase 1.10E-46 CL0016 Cco PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1496 K28089 - csv:101204561 1799.25