Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g1496 | ATGCAGCTTCTTCCCCGCCATTTCTTCCTACTGGTATGCTTCTCTTTCCCTATCTGTGTCGTTCTTGGCTTAACCTCAGATGGGTTGGCTTTATTGTCCCTCCAAACCCGCTGGACTACCCAAACCCCTTTTGTCCCTGTTTGGACTGCTTCTGATTCCACTCCCTGTTCTTGGGCTGGGATTGAATGTGATCAAAACCTTCTTGTCATCACCTTGAATCTCTCTTATTATGGGGTCACGGGTCAGCTTGGACCCGAAATTGCACGTTTGACCCACTTGCGTACCATTGATTTGAACACCAACGGTTTCTCTGGTGAAATTCCTTATGGGATAGGTAACTGCAGCCATTTAGAGTTCTTGGATCTTTCCCTCAACCAATTTGGTGGAGAAATTCCTCAGTCATTAACGCTCCTTAGGAACTTGACGTTTTTGAACTTCCATGACAATGTTCTAACTGGTGCAATACCTGACTCCTTATTTCAAAATCTTAATTTGCAGTATGTGTATCTTAGTGAAAACAATCTCAACAGTTCTATCCCTTCAAATGTAGGGAATTTGAGGCAACTAATTCATTTGTATCTGTATGGAAATCAGTTATCTGGTACCATACCTTCTTCCACAGGGAATTGTAGCCAATTGGAGGATCTTTATTTGGATCAGAATCAGTTAGTTGGAATATTGCCCAACAGTCTTAACAATCTCGATAATCTTGTTAATCTGGGTGTAAGCCACAACAATCTTGAGGGTCCAATTCCTTTGGGTTCAGGCAGTTGCCAGAGTCTTGAATTTATAGATTTGTCTTTCAATGGTTATACAGGAGGTATACCAGCTGGGCTAGGCAATTGTAGTCGCCTAACAACCTTAATCATTGTCAATTCAAGTCTAACAGGTCATATTCCTTCCTCCTTTGGCCAGCTAAGTAACCTTTCGCATCTTGATCTCTCTAGAAATCAACTGTCTGGTAATATACCTCCTGAATTTGGGGCTTGCAAATCCTTGAAAGAACTGGATTTGTACGTCAACCAACTTGAGGGACGTATCCCTAGTGAATTGGGTTTGATAAGTGTATTAGAGACCCTTCAATTGTTTTCGAACCGGTTGACTGGTGAGATTCCAATTAGCATCTGGAAGATTGCAAGTCTCCAACATATTCTTGTGTACGACAACAACCTCTGTGGGGAACTGCCCTCGATAATAACTGAACTCAAGCACCTCAAAAACATTTCTGTATTCGACAACCATTTTTCTGGAGTCATACCTCAAAGCTTGGGACTCAACAGTAGCTTAGTGCAAGTGGAGTTCACCAATAACCAGTTCACTGGTCAAATTCCACCTAATTTATGCTCTGGAAAAACATTAAAGGTGTTAAACTTAGGTTTGAATCAATTTCAAGGAAACATACCTTCTGATATAGGAATTTGTTTGACTCTTCAGAGATTGATTTTGCAAAGGAACAACCTCACAGGGGTTCTGCCACAATTTATGAGAAATCACAGCCTATCGTACATGGATGCCAATGAAAATAACCTGAATGGAACAATTCCATCAAGTTTGGGAAATTGCACCCTTCTCACTTCAATTAATTTGTCAAACAACAAGCTTACAGGTCATATACCAAATGAGTTAGGCAATCTTGTGAATCTTCGAAGTTTGAAATTGTCTCACAACTTCTTAGAAGGACCTTTGCCATCTTCCCTCTCAAATTGCACCAAGATGAATACGTTTGACGTAGGATTCAATTTATTGAATGGTTCTATACCTCATAGTTTGGCCAGCTGGAAAGTAATATCCACTTTGATATTAAAAGAGAATGGATTTACTGGAGGCCTCCCGAATGTATTATCAGAACTTCAAAGCCTTTTACTACTAGATCTTGGTGGCAATTTGTTTGGAGGTGAAATTCCTTCAAATATTGGAGATTTACAGAATCTATTTTATTCCTTGAATCTAAGTAACAATGGGTTAACTGGTCAACTACCTTCTGAGCTCGCGAGTCTGATCAAGCTAGAGGGGTTGGATTTATCTCACAATAATTTGACTGGAAGTCTTAGTGTTCTTGGTGAACTTAGTTCATCGTTAATGGACCTTGACATTTCAGATAATTTCTTTACAGGTCCTGTGCCGCAAACATTAATGAAGTTACTGAAGTCTCATCCCTCATCGTTCTTTGGTAACCCTGGGCTGTGCATTAGCTGTGATGAACTAGATGGCTTAAGTTGCAATAGAAATATCAGTATCAATCCTTGTGGTACTCATTCAAGCTCGCATGGTAGCTCTCGTCTTGGCAAAGTACAGATTGCAATGATAGCTCTTGGGTGTTCACTCTTTATTATTCTTTTGCTTCTTGGGTTGGTTTATAAGTTTGTTTGTAGCAGAAGAAACAAGCAAAACATTGAGACTGCTGCTCAAGGAGGAACAACTTCCTTGCTTGAAAAGGTGATGGAGGCCACTGATAATCTAGATGAGCGTTTCATCATTGGGAGAGGAGCACATGGAGTTGTTTATAAGGCCTCCCTGGATTCAAATAAAATTTTTGCAGTAAAGAAGCTTACATTTATAGAACGTAAAGGGGGAAGTCGGAATATGGTTAAAGAAATTAGAACTGTCAACAACATCAAGCACCGAAACTTGATCTCTTTGGAAGATTATTGGTTAGGAAAAGACCATGGTCTATTGCTTTACAAATACTATCCGAATGGAAGCCTTTATGATGTGTTGCATGGCATGAATCCAGCTCCAGCTCTAACATGGAAAGCCCACTATAATATAGCAATTGGTATTGCTCATGGATTGGCGTATCTCCATTACGATTGTGATCCTCCCATAATACACCGAGACATCAAACCGCAGAATATACTTCTAGATTCGGAGATGGAACCTCACATCGCCGATTTTGGTCTTGCAAGGCTGTTGGATCAAACTTCTGAATCAGCAACTTCATCATCTTTTGTGGGTACAATTGGCTACGTTGCACCAGAGAATGCATTTTCAGCAGCAAGGAGCAAAGCCTCAGATGTGTACAGCTATGGGGTGGTTTTACTCGAGCTGATAACCGGAAAGAAGCCATCAGATCCATCATTTACGGAGGTTGGAAATATGATGGCTTGGGTTCGATCGGTTTGGAATGAGACAGGTGAAATAGATAGAATTGTTGATTCAAGACTTGTGGAAGAACTAGCTAATTTTGATCATAGGGAGCAGATGAAGCAGGTGCTTCTTGTGGCTTTGCGATGCACAGAAAAGGAGCCTAACAGGAGACCGAGAATGAGAGATATTGTGGACCACTTGATTGATTCAAAGACGAGCCATTACAGCAAGCATGGCTAA | 3327 | 40.7 | MQLLPRHFFLLVCFSFPICVVLGLTSDGLALLSLQTRWTTQTPFVPVWTASDSTPCSWAGIECDQNLLVITLNLSYYGVTGQLGPEIARLTHLRTIDLNTNGFSGEIPYGIGNCSHLEFLDLSLNQFGGEIPQSLTLLRNLTFLNFHDNVLTGAIPDSLFQNLNLQYVYLSENNLNSSIPSNVGNLRQLIHLYLYGNQLSGTIPSSTGNCSQLEDLYLDQNQLVGILPNSLNNLDNLVNLGVSHNNLEGPIPLGSGSCQSLEFIDLSFNGYTGGIPAGLGNCSRLTTLIIVNSSLTGHIPSSFGQLSNLSHLDLSRNQLSGNIPPEFGACKSLKELDLYVNQLEGRIPSELGLISVLETLQLFSNRLTGEIPISIWKIASLQHILVYDNNLCGELPSIITELKHLKNISVFDNHFSGVIPQSLGLNSSLVQVEFTNNQFTGQIPPNLCSGKTLKVLNLGLNQFQGNIPSDIGICLTLQRLILQRNNLTGVLPQFMRNHSLSYMDANENNLNGTIPSSLGNCTLLTSINLSNNKLTGHIPNELGNLVNLRSLKLSHNFLEGPLPSSLSNCTKMNTFDVGFNLLNGSIPHSLASWKVISTLILKENGFTGGLPNVLSELQSLLLLDLGGNLFGGEIPSNIGDLQNLFYSLNLSNNGLTGQLPSELASLIKLEGLDLSHNNLTGSLSVLGELSSSLMDLDISDNFFTGPVPQTLMKLLKSHPSSFFGNPGLCISCDELDGLSCNRNISINPCGTHSSSHGSSRLGKVQIAMIALGCSLFIILLLLGLVYKFVCSRRNKQNIETAAQGGTTSLLEKVMEATDNLDERFIIGRGAHGVVYKASLDSNKIFAVKKLTFIERKGGSRNMVKEIRTVNNIKHRNLISLEDYWLGKDHGLLLYKYYPNGSLYDVLHGMNPAPALTWKAHYNIAIGIAHGLAYLHYDCDPPIIHRDIKPQNILLDSEMEPHIADFGLARLLDQTSESATSSSFVGTIGYVAPENAFSAARSKASDVYSYGVVLLELITGKKPSDPSFTEVGNMMAWVRSVWNETGEIDRIVDSRLVEELANFDHREQMKQVLLVALRCTEKEPNRRPRMRDIVDHLIDSKTSHYSKHG | 1108 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 29039229 | 29042655 | - | CcPI632755_07g014960.1 | Cco07g1496 | 184149 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g1496 | 1108 | PRINTS | Leucine-rich repeat signature | 309 | 322 | - | - | |
Cco07g1496 | 1108 | PRINTS | Leucine-rich repeat signature | 666 | 679 | - | - | |
Cco07g1496 | 1108 | Gene3D | Phosphorylase Kinase; domain 1 | 785 | 896 | - | - | |
Cco07g1496 | 1108 | SUPERFAMILY | RNI-like | 72 | 423 | - | - | |
Cco07g1496 | 1108 | SMART | serkin_6 | 820 | 1097 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco07g1496 | 1108 | FunFam | Probable leucine-rich repeat receptor-like protein kinase At2g33170 | 24 | 178 | - | - | |
Cco07g1496 | 1108 | ProSiteProfiles | Protein kinase domain profile. | 820 | 1098 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco07g1496 | 1108 | Pfam | Leucine Rich Repeat | 668 | 683 | IPR001611 | GO:0005515(InterPro) | |
Cco07g1496 | 1108 | Pfam | Leucine Rich Repeat | 116 | 136 | IPR001611 | GO:0005515(InterPro) | |
Cco07g1496 | 1108 | Pfam | Leucine Rich Repeat | 647 | 666 | IPR001611 | GO:0005515(InterPro) | |
Cco07g1496 | 1108 | Pfam | Leucine Rich Repeat | 189 | 210 | IPR001611 | GO:0005515(InterPro) | |
Cco07g1496 | 1108 | Pfam | Leucine Rich Repeat | 92 | 114 | IPR001611 | GO:0005515(InterPro) | |
Cco07g1496 | 1108 | Pfam | Leucine Rich Repeat | 164 | 186 | IPR001611 | GO:0005515(InterPro) | |
Cco07g1496 | 1108 | Pfam | Leucine Rich Repeat | 499 | 521 | IPR001611 | GO:0005515(InterPro) | |
Cco07g1496 | 1108 | Pfam | Leucine Rich Repeat | 547 | 569 | IPR001611 | GO:0005515(InterPro) | |
Cco07g1496 | 1108 | Pfam | Leucine Rich Repeat | 260 | 282 | IPR001611 | GO:0005515(InterPro) | |
Cco07g1496 | 1108 | Pfam | Leucine Rich Repeat | 524 | 545 | IPR001611 | GO:0005515(InterPro) | |
Cco07g1496 | 1108 | Pfam | Leucine Rich Repeat | 212 | 234 | IPR001611 | GO:0005515(InterPro) | |
Cco07g1496 | 1108 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 180 | 275 | - | - | |
Cco07g1496 | 1108 | SMART | LRR_typ_2 | 186 | 210 | IPR003591 | - | |
Cco07g1496 | 1108 | SMART | LRR_typ_2 | 138 | 162 | IPR003591 | - | |
Cco07g1496 | 1108 | SMART | LRR_typ_2 | 211 | 233 | IPR003591 | - | |
Cco07g1496 | 1108 | SMART | LRR_typ_2 | 306 | 330 | IPR003591 | - | |
Cco07g1496 | 1108 | SMART | LRR_typ_2 | 617 | 641 | IPR003591 | - | |
Cco07g1496 | 1108 | SMART | LRR_typ_2 | 90 | 114 | IPR003591 | - | |
Cco07g1496 | 1108 | SMART | LRR_typ_2 | 545 | 569 | IPR003591 | - | |
Cco07g1496 | 1108 | SMART | LRR_typ_2 | 666 | 689 | IPR003591 | - | |
Cco07g1496 | 1108 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 942 | 954 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco07g1496 | 1108 | Gene3D | Ribonuclease Inhibitor | 179 | 279 | IPR032675 | - | |
Cco07g1496 | 1108 | FunFam | Leucine-rich repeat receptor-like protein kinase PEPR1 | 451 | 737 | - | - | |
Cco07g1496 | 1108 | FunFam | Serine/threonine-protein kinase-like protein CCR4 | 897 | 1108 | - | - | |
Cco07g1496 | 1108 | Gene3D | Ribonuclease Inhibitor | 25 | 178 | IPR032675 | - | |
Cco07g1496 | 1108 | Gene3D | Transferase(Phosphotransferase) domain 1 | 897 | 1107 | - | - | |
Cco07g1496 | 1108 | Pfam | Leucine rich repeat | 283 | 343 | IPR001611 | GO:0005515(InterPro) | |
Cco07g1496 | 1108 | ProSitePatterns | Protein kinases ATP-binding region signature. | 826 | 849 | IPR017441 | GO:0005524(InterPro) | |
Cco07g1496 | 1108 | FunFam | LRR receptor-like serine/threonine-protein kinase RPK2 | 785 | 896 | - | - | |
Cco07g1496 | 1108 | SUPERFAMILY | RNI-like | 264 | 700 | - | - | |
Cco07g1496 | 1108 | Gene3D | Ribonuclease Inhibitor | 280 | 449 | IPR032675 | - | |
Cco07g1496 | 1108 | ProSiteProfiles | Leucine-rich repeat profile. | 668 | 690 | IPR001611 | GO:0005515(InterPro) | |
Cco07g1496 | 1108 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED | 341 | 1096 | - | - | |
Cco07g1496 | 1108 | Pfam | Protein kinase domain | 825 | 1095 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco07g1496 | 1108 | Pfam | Leucine rich repeat N-terminal domain | 25 | 64 | IPR013210 | - | |
Cco07g1496 | 1108 | Gene3D | Ribonuclease Inhibitor | 453 | 735 | IPR032675 | - | |
Cco07g1496 | 1108 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 300 | 395 | - | - | |
Cco07g1496 | 1108 | SUPERFAMILY | Protein kinase-like (PK-like) | 803 | 1096 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g1496 | Cco-Chr7:29039229 | Cco07g1757 | Cco-Chr7:31718764 | 2.90E-60 | dispersed | |
Cco07g1494 | Cco-Chr7:29031609 | Cco07g1496 | Cco-Chr7:29039229 | 1.30E-42 | proximal | |
Cco07g1496 | Cco-Chr7:29039229 | Cco07g1499 | Cco-Chr7:29072400 | 1.20E-18 | proximal | |
Cco07g1495 | Cco-Chr7:29031990 | Cco07g1496 | Cco-Chr7:29039229 | 6.80E-29 | tandem | |
Cco07g1496 | Cco-Chr7:29039229 | Cco07g1497 | Cco-Chr7:29048235 | 3.20E-35 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86991 | PF00069 | Pkinase | 1.10E-46 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g1496 | K28089 | - | csv:101204561 | 1799.25 |