Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g1499 | ATGAGACCTCTCCAGCCGCCTCAGGGTGCGAATCCTCCCACCGATCGTACTCGTCGTCGACCGCAGCTAAATAATCTTCAGCTTCCGCAGAGGGACAATACGTCTTTGGCTGTTCCTCTCCCTTTGCCTCCCACCTCCTCCAACTCTGCGCATCCTCCTTCCACCAGTCAACTCCACAACGCCAACCGCCCGCCGGACCCTCATCCTCAGAAGCGTCAGGCTTTTAGCCTTTCGGATTTTGAGCGAGTGAGCCGAATCGGAAGTGGATGCGGAGGCACCGTCTATAAAGTGGTTCACCGTCCCACCGGCGGTGTTTATGCTCTCAAGGTCATTTACGGCAACCATGAGGATGCGGTTAGGCTCCAGATGTGCCGGGAGGTCGAGATCCTTCGTGACGTTGACAATCCCTATGTGGTCAAGTGCCACGATATGTTCGATCATAACGGCGAAATCCAGGTTCTTCTTGAGTACATGGATCGGGGTTCTTTAGAAGGAACGCACATCCCTCAAGAACACCATCTCTCTGATTTGGCTCGCCAGATTCTTAGCGGCCTCGCTTATCTCCATAGCCGCCGTATCGTCCATCGCGACATCAAACCCTCGAATCTCCTCATCAATTCCCGAAGACAGGTTAAGATCGCTGATTTCGGCGTCGGTCGAATCTTGGAACAGACTATGGACCCTTGCAATTCCTCGGTTGGGACTATTGCGTACATGAGCCCTGAGAGAATCAATTCCGATCTAAATCAGGGTCAGTACAATGGGTATGCTGGTGATATTTGGAGCTTTGGGGTTAGCATATTGGAATTCTATCTCGGTCGGTTTCCTCTTGCTGTCGAGAGACCTGGGGATTGGGCGAGCTTGATGTGCGCTATTTGTATGGCTCAGCCACCAGAGGCCCCGCCCACTGCTTCCCCGGAGTTTCGCCACTTTATTGCCTGTTGTTTGCAAAGAGAGGCTCGGAAGAGATGGACTGCAGCTGCATTACTGGAACATGCGTTCATAACCAGGAAAAATGGAGCAACTCAGTACCAGAATCAGCAAGCTCATCATCAGAATCTTCGTCAACTATTACCTCCTCCACCCCTTCATCCTTCCAGCCTTTCCTGA | 1110 | 52.25 | MRPLQPPQGANPPTDRTRRRPQLNNLQLPQRDNTSLAVPLPLPPTSSNSAHPPSTSQLHNANRPPDPHPQKRQAFSLSDFERVSRIGSGCGGTVYKVVHRPTGGVYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTASPEFRHFIACCLQREARKRWTAAALLEHAFITRKNGATQYQNQQAHHQNLRQLLPPPPLHPSSLS | 369 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 29072400 | 29073509 | + | CcPI632755_07g014990.1 | Cco07g1499 | 184152 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g1499 | 369 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 60 | 342 | - | GO:0000165(PANTHER)|GO:0004708(PANTHER) | |
Cco07g1499 | 369 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 193 | 205 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco07g1499 | 369 | Gene3D | Transferase(Phosphotransferase) domain 1 | 161 | 358 | - | - | |
Cco07g1499 | 369 | CDD | PKc_MAPKK_plant_like | 78 | 336 | - | - | |
Cco07g1499 | 369 | MobiDBLite | consensus disorder prediction | 11 | 63 | - | - | |
Cco07g1499 | 369 | SMART | serkin_6 | 80 | 335 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco07g1499 | 369 | FunFam | Dual specificity mitogen-activated protein kinase kinase | 67 | 158 | - | - | |
Cco07g1499 | 369 | ProSitePatterns | Protein kinases ATP-binding region signature. | 86 | 109 | IPR017441 | GO:0005524(InterPro) | |
Cco07g1499 | 369 | SUPERFAMILY | Protein kinase-like (PK-like) | 59 | 355 | IPR011009 | - | |
Cco07g1499 | 369 | FunFam | Mitogen-activated protein kinase 2 | 160 | 348 | - | - | |
Cco07g1499 | 369 | MobiDBLite | consensus disorder prediction | 345 | 369 | - | - | |
Cco07g1499 | 369 | ProSiteProfiles | Protein kinase domain profile. | 80 | 335 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco07g1499 | 369 | Gene3D | Phosphorylase Kinase; domain 1 | 55 | 159 | - | - | |
Cco07g1499 | 369 | Pfam | Protein kinase domain | 80 | 335 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco07g1499 | 369 | MobiDBLite | consensus disorder prediction | 1 | 72 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1633 | Cco-Chr1:29063757 | Cco07g1499 | Cco-Chr7:29072400 | 3.50E-86 | dispersed | |
Cco07g1499 | Cco-Chr7:29072400 | Cco11g0228 | Cco-Chr11:2210164 | 3.50E-55 | dispersed | |
Cco07g1496 | Cco-Chr7:29039229 | Cco07g1499 | Cco-Chr7:29072400 | 1.20E-18 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86993 | PF00069 | Pkinase | 7.10E-60 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g1499 | K13413 | - | csv:101219669 | 688.723 |