Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1500 ATGGGGAAGACGCAAGAGGACGATATTTCGCAGAAGCTTCCTCGCTGCTGTGGAACTTCGCTATATTGCCTTCGCTTCCCATCAGCCACCCCAACTCGACTTCTTCTTCGCTTGATCTATAATTTTGGTGAAGTCGAGAATCTTATTTCCAAGAACTTTCCTTCTGGCTGGCCTTTGCCGGCTGTGGTGGCCAGAGATTTTATTTTTAAGCAACTGAATCACCTATACGATCCAAACTACTGGGATTCGACCTGGATATCCTCGTTGCGTCAGTTCAACTTCATCTCCAATCTGATGGGATCAACAGAGGAGAAAACAAATTACCTATCAGACGAAGAACTTCCGTTGAAGTCATCACCAGTCGCGAAGAACGTACTGCATAGCTTTGATTGTGAGACGACTCCTGTACGTTCTTCCCCAGATGATACAAGATGGTGGAAGACTAACAACATTCGTATTAGACCTCTTAGAAGTGCTTATATAGTGTTAGTTAGAGCAAAGATCAACGTGCTTCTACCTTTTGGTCCTTTGGCAATTCTGCTACATTACTTAACGGGAAAGCATGGATTGGTCTTCTTTTTCACTTTACTTGGAATTACACCCTTGGCAGAACGTCTTGGTTATGCAACTGAGCAGCTTGCTTTCTACACTGGACCAACAGTTGGTGGTCTTTTGAATGCAACTTTTGGAAATGCAACCGAAATGATTATTTCAATATATGCGTTAAAGAGTGGGATGATTAGGGTTGTTCAACAGTCATTACTGGGGTCAATCTTGTCAAATATGCTCCTTGTGCTTGGTTGTGCGTTCTTCACTGGTGGGATTGTTCATCATAAGAAGGTGCAGGTTTTCAATAAGGGTGCTGCTGTTGTGAATTCGGGATTATTGTTGATGGCTGTTATGGGAACAACTTTCCCGGCGGTGCTTCATTTCACCCACACAGAGCTTCATTCCGGAGAGTCAGCATTATCTCTTTCAAGATTTAGCAGTTGTATAATGTTAGTTGCATATGCAAGCTACCTTTTCTTTCAACTAAAAAGTCAGCATAATCTCTATGGTCCCCTTGATGAGGAAGTTGGTGATGAAGTTGAGGATGATTCTGAGATTTATGCTTGGGAAGCAATTGGATGGCTTGCCATCTTGACTGTATGGGTATCTATTTTATCTGGATACCTTGTTGATGCTATCCAGGGAGCATCTGAATCATTAAATTTGCCAGTGGCTTTTATTAGTGTAATTTTGTTGCCAATTGTTGGAAATGCTGCTGAACATGCAAGTGCAATCATGTTTGCCATGAAGGATAAGCTTGACATCACCCTTGGGGTTGCTATTGGATCATCAACACAAATATCCATGTTTGTGATCCCGTTTTGCGTAGTAGTTGGATGGTGCATGGGAGAACCAATGGACTTGAACTTTAAACTCTTTGAAACAGCAACTTTGTTTATCACTGTGCTGGTGGTGGCCTTTATGTTGCAGGAGGGGACATCAAATTATTTCAAAGGTCTAATGCTTATTCTATGTTACCTCATAGTGGCAGCCAGTTTTTTTGTACACGTTGACCCTAGTAATGATGATGATTAA 1584 41.92 MGKTQEDDISQKLPRCCGTSLYCLRFPSATPTRLLLRLIYNFGEVENLISKNFPSGWPLPAVVARDFIFKQLNHLYDPNYWDSTWISSLRQFNFISNLMGSTEEKTNYLSDEELPLKSSPVAKNVLHSFDCETTPVRSSPDDTRWWKTNNIRIRPLRSAYIVLVRAKINVLLPFGPLAILLHYLTGKHGLVFFFTLLGITPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHHKKVQVFNKGAAVVNSGLLLMAVMGTTFPAVLHFTHTELHSGESALSLSRFSSCIMLVAYASYLFFQLKSQHNLYGPLDEEVGDEVEDDSEIYAWEAIGWLAILTVWVSILSGYLVDAIQGASESLNLPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVVGWCMGEPMDLNFKLFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDPSNDDD 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29074926 29080373 + CcPI632755_07g015000.1 Cco07g1500 184153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1500 527 FunFam Vacuolar cation/proton exchanger 362 518 - -
Cco07g1500 527 NCBIfam calcium/proton exchanger 171 517 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Cco07g1500 527 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 124 522 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Cco07g1500 527 Pfam Sodium/calcium exchanger protein 190 345 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco07g1500 527 Pfam Sodium/calcium exchanger protein 374 516 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco07g1500 527 Gene3D - 219 518 IPR044880 -
Cco07g1500 527 FunFam Vacuolar cation/proton exchanger 219 358 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0081 Cco-Chr3:826407 Cco07g1500 Cco-Chr7:29074926 7.00E-81 dispersed
Cco07g1500 Cco-Chr7:29074926 Cco10g0404 Cco-Chr10:4771914 2.90E-151 dispersed
Cco07g1500 Cco-Chr7:29074926 Cco04g0890 Cco-Chr4:24556687 8.70E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1500 K07300 - csv:101219432 810.061