Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1502 ATGAGATATGGATTCATGGAGGGCATTCGACCACCGACGGGAAGAAGTAGGGGCCGGGAAATACGTAGGCGTGGGCTCATTCCGATTTCCAAGCTTTGTGCTTTCTGTAGCAAAGCTGTTTGTGAAAATGCCGCAGAGGCAGACCCCACTACAAAGTTGTCGTGGAGCCCAACTCTTGCGAGCTCAGTCCCACCATTCGTCCGGATTTCAACCCTTGTGTTGGGCTTTGCCCTTGATTTTGATCCCTTCAGATATTCCTTAATCTGCTTTGTAGAGCTTGGTGCTGGCCATATTTGGTTATGCGTCTCAAATGAACAGGATTCTCCTTCCATTCGATGTTCCTTCTCTTACATTAGCTTTCAGGCACTTCTTTTCTTCTTCGTCTGTTCTCAGTTCTTCAATGTCCTGCTCTGTATAGTGGAACGCAACTTGGTCTCGGCTCTAAATGCCATGTATAATAGTTTAAACTCGCCTCCAATTCTAACACAATGGAGTTCAAGTGGTGGAGATCCATGTGGACAAATTTGGAAAGGCGTTACTTGCTTAAGCTCACGGGTCACAGAAATTTCATTGTCTGGTTTAGGACTTTCTGGATCACTGGGATACCAGCTCTCAAGTTTGACATCTCTAAGTAATCTAGATGTGAGTAACAACAATCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAACTAAACCTTGGATGGAATAACTTCAGTGGAAGCATCCCCTATTCTATTTCTCAAATGAGTTCGCTTATTTCCTTGAACATGAGCCACAACCAGCTTCAGAATCAAGTGAATGATATGTTCTGGAAGCTTTCTTCCCTGTCCATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTGCCCTCCCCCAGAGTTTTAGCAACCTTACCAGTCTGAACACAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAAATCTTCCGCTACAAAATTTGAATGTCGAGAACAACCATTTTACTGGGTGGGTTCCTGAAAGATTGAAGAACATTAATATTCAGGAGGGTGGCAATTCTTGGAGTTTTGGGCTTGCACCCCCACCTCCACCTGGGACACCTCCAGCCAACCAAAATTACAGATATCACAAGGCTGGGAACAATTACAGCCCACTGAGTAGTGCTGGTGGTGGTGGCGGTAGCAATAGATCAGGAATCAGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTAGTGGTAGGAGCAGTACTAGCATATCTCCTTGTAAAGAGAAGACCCAAGAGGTCATCCACAGACATAGAAAAGCAAAAGCATGGGAACTTGCCTAGCGTATCTCCTGCTTCAAATGAAGTGCAAGATACATTGGCAGAGATGAAACTTGTTCATACTTCATCCTCATTTGATGCAAAAGAATTGGATTCTCCTGCTTCAATCAATCTTAAACCCCCACCTGTTGATCGTCATAAATCATTCAACGACAATGATACATCAAAGGTACCTGTGGTGAAGAAGACCAATGTCACTCCTCCGATAAGTGTGAAATCATATTCAATAGCAGATCTGCAAATGGCTACAGGTAGTTTCAGTGTAGAAAACCTTCTCGGTGAGGGATCACTTGGTCGTGTTTATCGGGCTCAGTTCAATGATGGGAAGGTTCTTGCCGTGAAGAAAATAGATTCAGCTTCCTTCCCTAAAGAATTGTTGGAATATTTCACGGAGATAGTTGCTAATGTATCTCAGTTGCATCATCCTAATGTAACCGAGTTAATGGGTTATTGCTCGGAGCATGGCCTGCATTTGCTACTATATGAGTTCCATAAGAATGGCTCACTACATGACTTCTTGCACATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGTGTCAAGATTGCTTTGGGGACAGCCCGTGCTTTGGAGTACCTACATGAAGTTTGTGCCCCGTCTGTTGTTCACAGAAATATTAAGTCATCCAATATCTTACTAGATGCTGAAATGAATCCTCATCTCTCCGATTGTGGCCTGGCTAGTTTTATAACCAATCTAGATCAGGTATTAGATCAGCAGCCAGGATCTGGGTACAATGCTCCTGAGGTTACAATGTCTGGCCAATATACATTAAAAAGCGACGTATATAGCTTTGGAGTGGTGATGTTGGAACTTCTAAGCGGACGCAAGTCATTTGATAGTTCAAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCTACACCTCAGCTCCATGATATTGATGCCTTGACGAAAATGGTTGATCCTGCACTTAAAGGCCTCTACCCAGTCAAGTCTCTTTCAAGATTCGCAGACGTTGTAGCTCTCTGTGTCCAGCCTGAGCCTGAATTCAGACCACCCATGTCAGAGGTGGTGGAAGCGTTGGTTCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGTGATCATGGGTCATCTTTTAGAACTGATGATCCTGATACACGCGAGACATCTTAA 2511 43.97 MRYGFMEGIRPPTGRSRGREIRRRGLIPISKLCAFCSKAVCENAAEADPTTKLSWSPTLASSVPPFVRISTLVLGFALDFDPFRYSLICFVELGAGHIWLCVSNEQDSPSIRCSFSYISFQALLFFFVCSQFFNVLLCIVERNLVSALNAMYNSLNSPPILTQWSSSGGDPCGQIWKGVTCLSSRVTEISLSGLGLSGSLGYQLSSLTSLSNLDVSNNNLGPDIPYQLPQNLQKLNLGWNNFSGSIPYSISQMSSLISLNMSHNQLQNQVNDMFWKLSSLSMLDVSFNFLSGALPQSFSNLTSLNTMFLQNNQFSGTIDVLANLPLQNLNVENNHFTGWVPERLKNINIQEGGNSWSFGLAPPPPPGTPPANQNYRYHKAGNNYSPLSSAGGGGGSNRSGISGGAIAGILISVLVVGAVLAYLLVKRRPKRSSTDIEKQKHGNLPSVSPASNEVQDTLAEMKLVHTSSSFDAKELDSPASINLKPPPVDRHKSFNDNDTSKVPVVKKTNVTPPISVKSYSIADLQMATGSFSVENLLGEGSLGRVYRAQFNDGKVLAVKKIDSASFPKELLEYFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSSNILLDAEMNPHLSDCGLASFITNLDQVLDQQPGSGYNAPEVTMSGQYTLKSDVYSFGVVMLELLSGRKSFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDDPDTRETS 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29092005 29099777 + CcPI632755_07g015020.1 Cco07g1502 184155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1502 836 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 141 367 - -
Cco07g1502 836 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 495 608 - -
Cco07g1502 836 Pfam Leucine rich repeat 231 288 IPR001611 GO:0005515(InterPro)
Cco07g1502 836 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 609 817 - -
Cco07g1502 836 CDD STKc_IRAK 537 806 - -
Cco07g1502 836 MobiDBLite consensus disorder prediction 430 451 - -
Cco07g1502 836 ProSiteProfiles Protein kinase domain profile. 531 806 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1502 836 MobiDBLite consensus disorder prediction 355 380 - -
Cco07g1502 836 Pfam Protein tyrosine and serine/threonine kinase 533 803 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1502 836 Gene3D Phosphorylase Kinase; domain 1 491 608 - -
Cco07g1502 836 SUPERFAMILY L domain-like 145 346 - -
Cco07g1502 836 Gene3D Transferase(Phosphotransferase) domain 1 610 826 - -
Cco07g1502 836 PANTHER LEUCINE RICH REPEAT KINASE 2 406 805 IPR051420 -
Cco07g1502 836 Gene3D Ribonuclease Inhibitor 138 361 IPR032675 -
Cco07g1502 836 MobiDBLite consensus disorder prediction 476 500 - -
Cco07g1502 836 SUPERFAMILY Protein kinase-like (PK-like) 511 803 IPR011009 -
Cco07g1502 836 MobiDBLite consensus disorder prediction 814 836 - -
Cco07g1502 836 Pfam Leucine rich repeat N-terminal domain 146 181 IPR013210 -
Cco07g1502 836 MobiDBLite consensus disorder prediction 821 836 - -
Cco07g1502 836 SMART LRR_typ_2 207 231 IPR003591 -
Cco07g1502 836 SMART LRR_typ_2 253 276 IPR003591 -
Cco07g1502 836 SMART LRR_typ_2 277 300 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1502 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2060 Cco-Chr4:34598832 Cco07g1502 Cco-Chr7:29092005 1.60E-110 dispersed
Cco07g1502 Cco-Chr7:29092005 Cco07g1666 Cco-Chr7:30704976 2.30E-70 dispersed
Cco01g1034 Cco-Chr1:13238916 Cco07g1502 Cco-Chr7:29092005 1.20E-147 transposed
Cco08g0620 Cco-Chr8:16308947 Cco07g1502 Cco-Chr7:29092005 3.30E-163 transposed
Cco10g1720 Cco-Chr10:30746119 Cco07g1502 Cco-Chr7:29092005 6.30E-101 transposed
Cco03g1559 Cco-Chr3:30230959 Cco07g1502 Cco-Chr7:29092005 3.80E-49 wgd
Cco07g1502 Cco-Chr7:29092005 Cco09g0147 Cco-Chr9:1310727 7.10E-197 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco02g0132 . 34 788 Strubbelig Receptor Gene Family AT4G03390 62.3 6.6e-205 711.1
Cco04g2060 . 17 752 Strubbelig Receptor Gene Family AT4G03390 54.2 2.8e-163 572.8
Cco09g0147 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.1 1.3e-91 334.7
Cco10g1720 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.7 6.5e-186 647.9
Cco08g0620 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.8 1.3e-196 683.3
Cco07g1502 . 145 829 Strubbelig Receptor Gene Family AT1G78980 51.0 2.6e-144 509.6
Cco08g0620 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.9 1.7e-148 523.5
Cco01g1034 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 6.1e-85 312.4
Cco10g1720 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.7 6.5e-186 647.9
Cco02g0132 . 34 788 Strubbelig Receptor Gene Family AT4G03390 62.3 6.6e-205 711.1
Cco04g2060 . 17 752 Strubbelig Receptor Gene Family AT4G03390 54.2 2.8e-163 572.8
Cco09g0147 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.1 1.3e-91 334.7
Cco08g0620 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.9 1.7e-148 523.5
Cco08g0620 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.8 1.3e-196 683.3
Cco07g1502 . 145 829 Strubbelig Receptor Gene Family AT1G78980 51.0 2.6e-144 509.6
Cco07g1502 . 146 829 Strubbelig Receptor Gene Family AT1G53730 59.5 2.9e-194 675.6
Cco09g0147 . 1 712 Strubbelig Receptor Gene Family AT1G53730 60.5 6.4e-186 647.9
Cco01g1034 . 9 689 Strubbelig Receptor Gene Family AT1G53730 51.4 4.5e-147 518.8
Cco07g1502 . 146 824 Strubbelig Receptor Gene Family AT3G14350 56.1 4.5e-173 605.1
Cco09g0147 . 6 702 Strubbelig Receptor Gene Family AT3G14350 55.3 8.3e-167 584.3
Cco01g1034 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.3 2.5e-177 619.0
Cco07g1502 . 508 836 Strubbelig Receptor Gene Family AT4G22130 62.8 8.9e-119 424.5
Cco09g0147 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.9 1.7e-117 420.2
Cco02g0132 . 485 790 Strubbelig Receptor Gene Family AT4G22130 59.9 3.5e-107 386.0
Cco08g0620 . 357 704 Strubbelig Receptor Gene Family AT4G22130 52.4 9.3e-100 361.3
Cco04g2060 . 464 752 Strubbelig Receptor Gene Family AT4G22130 59.5 2.3e-98 356.7
Cco10g1720 . 387 709 Strubbelig Receptor Gene Family AT4G22130 52.0 5.5e-92 335.5
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86994 PF07714 PK_Tyr_Ser-Thr 1.10E-39 CL0016 Cco PK