Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1508 ATGGCACAATCCGACGACTGCGCCGTCACCGGATTTTTGTTCTCCGGCAACCCCATTTCCATTTCCAACATAAAAATCAAGCTGTTGGTGTTAGCCGTGTGGGCTGCGCTTGTCCTGACGGGCGTCTCCTCCGACGAGCACGTGAGAAGCACGTGCGCCATGACGCTTTACCCGGAGCTTTGCGAGACGACGATATCGAGCGGAGTGGGAAGTAAGAGTTCAAAAGAGGCAATCGAATCGTCGGTGAATATTACGATTGGCGCAGTGAAGGATAACTATAAAAGGATCAAGAAATTGGTTAAGACAGGAAAGAATCTGAGAAAGCGAGAGAAGATTGCTCTAAATGACTGTCTAGAAACAGGGGAGGAGACGCTGAGAGAGCTGTATGAGGTTGTTGATGATCTCCATGAATATCCAAATAAGAAATCTCTCTCACAATACGCCGATGACCTCAAAACCTTCCTCAGTTCCGCCATTACGAATCAGGAGACATGCGTGGACGGATTCTCACACGACAAAGCCGACAAGAAGGTACGAGAGTCATTGGAAGCAGGCCTAATTCACGTCGAAAAGCTTTGTAGCGTTGCTTTAGCCTTGATTAAGAATCTAACCGACACCGACATTGCCAATCACAACAACAACCTCATCAATAGAAACCAGCTCACGGAGATAAACAATGGACGCGACCACGACGGAATTAACTGGCCCCATTGGATGTCGCCTGGCGACCGAAGGCTTTTGCAGGCTTCGTCCACCGCCACTCCCGATGTGGTAGTGGCAGCCGATGGAAGTGGCAATTTCCGAACGGTGTCGGAGGCGGTTGCGGCGGCGCCGAATAGAAGTAGCCGGAGGTATATAATAAGAATAAAGGCGGGGGTTTATAGAGAAAATGTGAATGTGCCGAGTAGTAAGACGAATATAATGTTTTGGGGAGATGGAAGAACCACCACTATAATCACCGGGAACAGAAATGTCGTCGATGGTAGTACCACCTTCAACTCCGCCACCGTCGCGGCAGTGGGAGAAAGGTTCTTGGCGAGAGACATTACGTTTCAGAACACCGCCGGTCCATCGAAGCACCAAGCGGTGGCTCTCCGCGTCGGCTCCGACCTCTCTGCTTTTTACCGCTGCGACATGCTCGCTTATCAAGACACACTCTACGTCCACTCCAACCGCCAATTCTACGTCAAATGCATAATCATCGGCACCGTCGATTTCATCTTCGGCAACGCCGCCGCCGTCATCCAAGACTGCGACATCCACGCTCGCCGCCCCAATCCCGGGCAGAGGAACATGGTGACTGCACAAGGAAGAACAGACCCAAATCAGAACACTGGGATTGTCATCCAGAAATGTCGAATCGGAAGCACCTCCGATTTGCAGCCGGTGATCAGTAATTTCCCAACGTTTCTGGGGCGGCCGTGGCAGAGATACTCGAGAACGGTGGTTATGCAGACGAGCATTAGCAATGTGATCGATCCGGCAGGGTGGCATGTTTGGAATGGGAATTTTGCGCTTGATACTCTGTTTTACGCCGAGTATCAGAATAGCGGGCCCGGTGCTGATACGTCAAGGAGAGTTACGTGGAAGGGGTATAGGGTTCTTACAAGTGCGGCGGAAGCTGCGGCCTTCACGGCAGGTAATTTCATCGGCGGCGGCACCTGGCTGAGATCCACTGGATTCCCATTTTCACTTGGGCTGTAA 1704 51.47 MAQSDDCAVTGFLFSGNPISISNIKIKLLVLAVWAALVLTGVSSDEHVRSTCAMTLYPELCETTISSGVGSKSSKEAIESSVNITIGAVKDNYKRIKKLVKTGKNLRKREKIALNDCLETGEETLRELYEVVDDLHEYPNKKSLSQYADDLKTFLSSAITNQETCVDGFSHDKADKKVRESLEAGLIHVEKLCSVALALIKNLTDTDIANHNNNLINRNQLTEINNGRDHDGINWPHWMSPGDRRLLQASSTATPDVVVAADGSGNFRTVSEAVAAAPNRSSRRYIIRIKAGVYRENVNVPSSKTNIMFWGDGRTTTIITGNRNVVDGSTTFNSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSNRQFYVKCIIIGTVDFIFGNAAAVIQDCDIHARRPNPGQRNMVTAQGRTDPNQNTGIVIQKCRIGSTSDLQPVISNFPTFLGRPWQRYSRTVVMQTSISNVIDPAGWHVWNGNFALDTLFYAEYQNSGPGADTSRRVTWKGYRVLTSAAEAAAFTAGNFIGGGTWLRSTGFPFSLGL 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29131980 29135453 + CcPI632755_07g015080.1 Cco07g1508 184161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1508 567 PANTHER PECTINESTERASE 28 558 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cco07g1508 567 FunFam Pectinesterase 44 204 - -
Cco07g1508 567 SUPERFAMILY Pectin lyase-like 250 566 IPR011050 -
Cco07g1508 567 Pfam Pectinesterase 256 552 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco07g1508 567 CDD PMEI-like_3 50 204 - -
Cco07g1508 567 Gene3D - 250 567 IPR012334 -
Cco07g1508 567 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Cco07g1508 567 NCBIfam pectinesterase inhibitor domain 31 204 IPR006501 GO:0004857(InterPro)
Cco07g1508 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 204 IPR035513 -
Cco07g1508 567 FunFam Pectinesterase 250 567 - -
Cco07g1508 567 SMART PMEI_2 43 199 IPR006501 GO:0004857(InterPro)
Cco07g1508 567 Pfam Plant invertase/pectin methylesterase inhibitor 48 199 IPR006501 GO:0004857(InterPro)
Cco07g1508 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 205 IPR035513 -
Cco07g1508 567 ProSitePatterns Pectinesterase signature 1. 281 300 IPR018040 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1508 Cco-Chr7:29131980 Cco09g0540 Cco-Chr9:4731061 2.50E-129 dispersed
Cco07g1508 Cco-Chr7:29131980 Cco07g1509 Cco-Chr7:29142224 5.50E-100 tandem
Cco09g0858 Cco-Chr9:8087328 Cco07g1508 Cco-Chr7:29131980 1.10E-182 transposed
Cco07g1508 Cco-Chr7:29131980 Cco09g0143 Cco-Chr9:1255122 3.10E-220 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1508 K01051 - csv:101207996 926.776